Package: fdrtool 1.2.18
Korbinian Strimmer
fdrtool: Estimation of (Local) False Discovery Rates and Higher Criticism
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
Authors:
fdrtool_1.2.18.tar.gz
fdrtool_1.2.18.tar.gz(r-4.5-noble)fdrtool_1.2.18.tar.gz(r-4.4-noble)
fdrtool_1.2.18.tgz(r-4.4-emscripten)fdrtool_1.2.18.tgz(r-4.3-emscripten)
fdrtool.pdf |fdrtool.html✨
fdrtool/json (API)
NEWS
| # Install 'fdrtool' in R: |
| install.packages('fdrtool', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/strimmerlab/software/issues
- pvalues - Example p-Values
Last updated 3 months agofrom:600e44d4d8. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 19 2024 |
| R-4.5-linux-x86_64 | OK | Nov 19 2024 |
Exports:censored.fitdcor0dhalfnormfdrtoolfitted.monoregfndr.cutoffgcmlcmgrenanderhc.scorehc.threshmonoregpcor0phalfnormplot.grenanderplot.monoregpval.estimate.eta0qcor0qhalfnormrcor0residuals.monoregrhalfnormsd2thetatheta2sd
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fit Null Distribution To Censored Data by Maximum Likelihood | censored.fit fndr.cutoff |
| Distribution of the Vanishing Correlation Coefficient (rho=0) and Related Functions | dcor0 pcor0 qcor0 rcor0 |
| Estimate (Local) False Discovery Rates For Diverse Test Statistics | fdrtool |
| Greatest Convex Minorant and Least Concave Majorant | gcmlcm |
| Grenander Estimator of a Decreasing or Increasing Density | grenander plot.grenander |
| The Half-Normal Distribution | dhalfnorm halfnormal phalfnorm qhalfnorm rhalfnorm sd2theta theta2sd |
| Compute Empirical Higher Criticism Scores and Corresponding Decision Threshold From p-Values | hc.score hc.thresh |
| Monotone Regression: Isotonic Regression and Antitonic Regression | fitted.monoreg monoreg plot.monoreg residuals.monoreg |
| Estimate the Proportion of Null p-Values | pval.estimate.eta0 |
| Example p-Values | pvalues |