Package: ROKET 1.0.0

Paul Little
ROKET: Optimal Transport-Based Kernel Regression
Perform optimal transport on somatic point mutations and kernel regression hypothesis testing by integrating pathway level similarities at the gene level (Little et al. (2023) <doi:10.1111/biom.13769>). The software implements balanced and unbalanced optimal transport and omnibus tests with 'C++' across a set of tumor samples and allows for multi-threading to decrease computational runtime.
Authors:
ROKET_1.0.0.tar.gz
ROKET_1.0.0.tar.gz(r-4.5-noble)ROKET_1.0.0.tar.gz(r-4.4-noble)
ROKET_1.0.0.tgz(r-4.4-emscripten)ROKET_1.0.0.tgz(r-4.3-emscripten)
ROKET.pdf |ROKET.html✨
ROKET/json (API)
# Install 'ROKET' in R: |
install.packages('ROKET', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 10 days agofrom:c650735d34. Checks:3 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 06 2025 |
R-4.5-linux-x86_64 | OK | Mar 06 2025 |
R-4.4-linux-x86_64 | OK | Mar 06 2025 |
Exports:kernTESTkOT_sim_AGGkOT_sim_makekOT_sim_OTkOT_sim_REGrun_myOTrun_myOTs
Dependencies:apeaskpassbase64encbitopsbootbrewbriobslibcachemcallrcaToolsclicliprclueclustercodetoolscolorspacecommonmarkCompQuadFormcpp11crayoncredentialscrosstalkcurldata.tabledescdevtoolsdiffobjdigestdirmultdownlitdplyrellipsisevaluatefansifarverfastmapfBasicsfontawesomeforeachfsgenericsgertggplot2ggrepelghgitcredsgluegplotsgssgtablegtoolsGUniFrachighrhtmltoolshtmlwidgetshttpuvhttrhttr2iniinlineisobanditeratorsjquerylibjsonlitekernlabKernSmoothknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmimeminiUIminqaMiRKATmixtoolsmodeestmunsellnlmenloptropensslPearsonDSpermutepillarpkgbuildpkgconfigpkgdownpkgloadplotlypraiseprettyunitsprocessxprofvispromisespspurrrquantregR6raggrappdirsrbibutilsrcmdcheckRColorBrewerRcppRcppArmadilloRcppEigenRCurlRdpackreformulasremotesrlangrmarkdownrmutilroxygen2rpartrprojrootrstudioapirversionssassscalessegmentedsessioninfoshinysmartersourcetoolsSparseMspatialstablestablediststatipstatmodstringistringrsurvivalsyssystemfontstestthattextshapingtibbletidyrtidyselecttimeDatetimeSeriestinytexurlcheckerusethisutf8vctrsveganviridisLitewaldowhiskerwithrxfunxml2xopenxtableyamlzip
Readme and manuals
Help Manual
Help page | Topics |
---|---|
kernTEST | kernTEST |
kOT_sim_AGG | kOT_sim_AGG |
kOT_sim_make | kOT_sim_make |
kOT_sim_OT | kOT_sim_OT |
kOT_sim_REG | kOT_sim_REG |
run_myOT | run_myOT |
run_myOTs | run_myOTs |