Package: ROKET 1.0.0

Paul Little

ROKET: Optimal Transport-Based Kernel Regression

Perform optimal transport on somatic point mutations and kernel regression hypothesis testing by integrating pathway level similarities at the gene level (Little et al. (2023) <doi:10.1111/biom.13769>). The software implements balanced and unbalanced optimal transport and omnibus tests with 'C++' across a set of tumor samples and allows for multi-threading to decrease computational runtime.

Authors:Paul Little [aut, cre]

ROKET_1.0.0.tar.gz
ROKET_1.0.0.tar.gz(r-4.5-noble)ROKET_1.0.0.tar.gz(r-4.4-noble)
ROKET_1.0.0.tgz(r-4.4-emscripten)ROKET_1.0.0.tgz(r-4.3-emscripten)
ROKET.pdf |ROKET.html✨
ROKET/json (API)

# Install 'ROKET' in R:

install.packages('ROKET', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblas cpp openmp

2.00 score 7 exports 169 dependencies

Last updated 10 days agofrom:c650735d34. Checks:3 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 06 2025
R-4.5-linux-x86_64	OK	Mar 06 2025
R-4.4-linux-x86_64	OK	Mar 06 2025

Exports:kernTEST kOT_sim_AGG kOT_sim_make kOT_sim_OT kOT_sim_REG run_myOT run_myOTs

Dependencies:ape askpass base64enc bitops boot brew brio bslib cachem callr caTools cli clipr clue cluster codetools colorspace commonmark CompQuadForm cpp11 crayon credentials crosstalk curl data.table desc devtools diffobj digest dirmult downlit dplyr ellipsis evaluate fansi farver fastmap fBasics fontawesome foreach fs generics gert ggplot2 ggrepel gh gitcreds glue gplots gss gtable gtools GUniFrac highr htmltools htmlwidgets httpuv httr httr2 ini inline isoband iterators jquerylib jsonlite kernlab KernSmooth knitr labeling later lattice lazyeval lifecycle lme4 magrittr MASS Matrix MatrixModels matrixStats memoise mgcv mime miniUI minqa MiRKAT mixtools modeest munsell nlme nloptr openssl PearsonDS permute pillar pkgbuild pkgconfig pkgdown pkgload plotly praise prettyunits processx profvis promises ps purrr quantreg R6 ragg rappdirs rbibutils rcmdcheck RColorBrewer Rcpp RcppArmadillo RcppEigen RCurl Rdpack reformulas remotes rlang rmarkdown rmutil roxygen2 rpart rprojroot rstudioapi rversions sass scales segmented sessioninfo shiny smarter sourcetools SparseM spatial stable stabledist statip statmod stringi stringr survival sys systemfonts testthat textshaping tibble tidyr tidyselect timeDate timeSeries tinytex urlchecker usethis utf8 vctrs vegan viridisLite waldo whisker withr xfun xml2 xopen xtable yaml zip

Introduction

Paul Little

Rendered fromintro.Rmdusingknitr::rmarkdownon Mar 06 2025.

Last update: 2025-03-06
Started: 2025-03-06

Help page	Topics
kernTEST	kernTEST
kOT_sim_AGG	kOT_sim_AGG
kOT_sim_make	kOT_sim_make
kOT_sim_OT	kOT_sim_OT
kOT_sim_REG	kOT_sim_REG
run_myOT	run_myOT
run_myOTs	run_myOTs

Package: ROKET 1.0.0

ROKET: Optimal Transport-Based Kernel Regression

Introduction

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)