{
  "_id": "6a129723acfb0bcc41d0c9ca",
  "Package": "ROKET",
  "Type": "Package",
  "Title": "Optimal Transport-Based Kernel Regression",
  "Version": "1.0.0",
  "Date": "2025-03-04",
  "Authors@R": "person(\"Paul\",\"Little\",\nemail = \"pllittle321@gmail.com\",\nrole = c(\"aut\",\"cre\"))",
  "Description": "Perform optimal transport on somatic point mutations and\nkernel regression hypothesis testing by integrating pathway\nlevel similarities at the gene level (Little et al. (2023)\n<doi:10.1111/biom.13769>). The software implements balanced and\nunbalanced optimal transport and omnibus tests with 'C++'\nacross a set of tumor samples and allows for multi-threading to\ndecrease computational runtime.",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "License": "GPL (>= 3)",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-24 06:08:53 UTC",
    "User": "root"
  },
  "Author": "Paul Little [aut, cre]",
  "Maintainer": "Paul Little <pllittle321@gmail.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-03-06 17:32:53 UTC",
  "RemoteUrl": "https://github.com/cran/ROKET",
  "RemoteRef": "HEAD",
  "RemoteSha": "c650735d3473d9f89d6574db447f856e6dfd1031",
  "MD5sum": "5ec8bf78b514c8968735b57c8a5c0188",
  "_user": "cran",
  "_type": "src",
  "_file": "ROKET_1.0.0.tar.gz",
  "_fileid": "c5785a7e62bf603618590394bc1c88c9af39df1e4dab0895407d1ee8cbbffbbf",
  "_filesize": 2311925,
  "_sha256": "c5785a7e62bf603618590394bc1c88c9af39df1e4dab0895407d1ee8cbbffbbf",
  "_created": "2026-05-24T06:08:53.000Z",
  "_published": "2026-05-24T06:13:55.813Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77576347605,
      "time": 219,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7182779386"
    },
    {
      "job": 77576347609,
      "time": 236,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7182781112"
    },
    {
      "job": 77576347608,
      "time": 213,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182779056"
    },
    {
      "job": 77576347606,
      "time": 236,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182781126"
    },
    {
      "job": 77576059229,
      "time": 306,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182756343"
    },
    {
      "job": 77576347587,
      "time": 169,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182774566"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26353572426",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/ROKET",
  "_commit": {
    "id": "c650735d3473d9f89d6574db447f856e6dfd1031",
    "author": "Paul Little <pllittle321@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.0\n",
    "time": 1741282373
  },
  "_maintainer": {
    "name": "Paul Little",
    "email": "pllittle321@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "smarter",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "MiRKAT",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "reshape2",
      "role": "Suggests"
    },
    {
      "package": "ggdendro",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 211,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ROKET"
  },
  "_searchresults": 0,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ROKET.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2025-03-06"
    }
  ],
  "_exports": [
    "kernTEST",
    "kOT_sim_AGG",
    "kOT_sim_make",
    "kOT_sim_OT",
    "kOT_sim_REG",
    "run_myOT",
    "run_myOTs"
  ],
  "_help": [
    {
      "page": "kernTEST",
      "title": "kernTEST",
      "topics": [
        "kernTEST"
      ]
    },
    {
      "page": "kOT_sim_AGG",
      "title": "kOT_sim_AGG",
      "topics": [
        "kOT_sim_AGG"
      ]
    },
    {
      "page": "kOT_sim_make",
      "title": "kOT_sim_make",
      "topics": [
        "kOT_sim_make"
      ]
    },
    {
      "page": "kOT_sim_OT",
      "title": "kOT_sim_OT",
      "topics": [
        "kOT_sim_OT"
      ]
    },
    {
      "page": "kOT_sim_REG",
      "title": "kOT_sim_REG",
      "topics": [
        "kOT_sim_REG"
      ]
    },
    {
      "page": "run_myOT",
      "title": "run_myOT",
      "topics": [
        "run_myOT"
      ]
    },
    {
      "page": "run_myOTs",
      "title": "run_myOTs",
      "topics": [
        "run_myOTs"
      ]
    }
  ],
  "_rundeps": [
    "ape",
    "askpass",
    "base64enc",
    "bitops",
    "boot",
    "brew",
    "brio",
    "bslib",
    "cachem",
    "callr",
    "caTools",
    "cli",
    "clipr",
    "clue",
    "cluster",
    "codetools",
    "commonmark",
    "CompQuadForm",
    "cpp11",
    "crayon",
    "credentials",
    "crosstalk",
    "curl",
    "data.table",
    "desc",
    "devtools",
    "diffobj",
    "digest",
    "dirmult",
    "downlit",
    "dplyr",
    "ellipsis",
    "evaluate",
    "fansi",
    "farver",
    "fastmap",
    "fBasics",
    "fontawesome",
    "foreach",
    "fs",
    "generics",
    "gert",
    "ggplot2",
    "ggrepel",
    "gh",
    "gitcreds",
    "glue",
    "gplots",
    "gss",
    "gtable",
    "gtools",
    "GUniFrac",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "httr2",
    "ini",
    "inline",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "kernlab",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "lme4",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "matrixStats",
    "memoise",
    "mgcv",
    "mime",
    "miniUI",
    "minqa",
    "MiRKAT",
    "mixtools",
    "modeest",
    "nlme",
    "nloptr",
    "openssl",
    "otel",
    "pak",
    "PearsonDS",
    "permute",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "pkgdown",
    "pkgload",
    "plotly",
    "praise",
    "prettyunits",
    "processx",
    "profvis",
    "promises",
    "ps",
    "purrr",
    "quantreg",
    "R6",
    "ragg",
    "rappdirs",
    "rbibutils",
    "rcmdcheck",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "RCurl",
    "Rdpack",
    "reformulas",
    "rlang",
    "rmarkdown",
    "rmutil",
    "roxygen2",
    "rpart",
    "rprojroot",
    "rstudioapi",
    "rversions",
    "S7",
    "sass",
    "scales",
    "segmented",
    "sessioninfo",
    "shiny",
    "smarter",
    "sourcetools",
    "SparseM",
    "spatial",
    "stable",
    "stabledist",
    "statip",
    "statmod",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "systemfonts",
    "testthat",
    "textshaping",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "timeSeries",
    "tinytex",
    "urlchecker",
    "usethis",
    "utf8",
    "vctrs",
    "vegan",
    "viridisLite",
    "waldo",
    "whisker",
    "withr",
    "xfun",
    "xml2",
    "xopen",
    "xtable",
    "yaml",
    "zip"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "intro.Rmd",
      "filename": "intro.html",
      "title": "Introduction",
      "author": "Paul Little",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Distance Motivation",
        "Optimal Transport",
        "Background papers",
        "Basic Idea",
        "Balanced OT",
        "Unbalanced OT",
        "Simulated Example",
        "Gene-Gene Similarity",
        "Simulate mutated gene statuses",
        "Euclidean distance",
        "OT distance",
        "Code between two samples",
        "Code between all sample pairs",
        "Dendrograms",
        "Kernel Regression and Association",
        "Models",
        "Distance to Kernel",
        "Hypothesis Testing",
        "Session Info",
        "References"
      ],
      "created": "2025-03-06 17:32:53",
      "modified": "2025-03-06 17:32:53",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "roket",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-24T06:11:57.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "c650735d3473d9f89d6574db447f856e6dfd1031",
      "fileid": "371d7fe6bed7eec8ac381c0a9b63601d78dcb4c1d210baf01d2456e8b2b430aa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353572426"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-24T06:12:05.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "c650735d3473d9f89d6574db447f856e6dfd1031",
      "fileid": "9dc9562d35b5f678514c80eb0457f001fc85c941eeaa64943b543827c73998bb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353572426"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-24T06:11:54.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "c650735d3473d9f89d6574db447f856e6dfd1031",
      "fileid": "3638e744fdd97c1cf0215901ad29228a488afa52bc745e4af2a95b1c29179a07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353572426"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-24T06:12:05.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "c650735d3473d9f89d6574db447f856e6dfd1031",
      "fileid": "f29348b2baa5336bb5c8b955510f8b0b724e14162461c6bdd78d5d029bc92b12",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353572426"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-05-24T06:12:16.000Z",
      "arch": "emscripten",
      "commit": "c650735d3473d9f89d6574db447f856e6dfd1031",
      "fileid": "ec920286af6451ccb59295404652e934b4df08eda5b06cd1b9866de2bdebd763",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353572426"
    }
  ]
}