Package: PAFit 1.2.10
PAFit: Generative Mechanism Estimation in Temporal Complex Networks
Statistical methods for estimating preferential attachment and node fitness generative mechanisms in temporal complex networks are provided. Thong Pham et al. (2015) <doi:10.1371/journal.pone.0137796>. Thong Pham et al. (2016) <doi:10.1038/srep32558>. Thong Pham et al. (2020) <doi:10.18637/jss.v092.i03>. Thong Pham et al. (2021) <doi:10.1093/comnet/cnab024>.
Authors:
PAFit_1.2.10.tar.gz
PAFit_1.2.10.tar.gz(r-4.5-noble)PAFit_1.2.10.tar.gz(r-4.4-noble)
PAFit_1.2.10.tgz(r-4.4-emscripten)PAFit_1.2.10.tgz(r-4.3-emscripten)
PAFit.pdf |PAFit.html✨
PAFit/json (API)
NEWS
# Install 'PAFit' in R: |
install.packages('PAFit', repos = 'https://cloud.r-project.org') |
Bug tracker:https://github.com/thongphamthe/pafit/issues1 issues
- coauthor.author_id - A collaboration network between authors of papers in the field of complex networks with article time-stamps
- coauthor.net - A collaboration network between authors of papers in the field of complex networks with article time-stamps
- coauthor.truetime - A collaboration network between authors of papers in the field of complex networks with article time-stamps
Last updated 1 years agofrom:5d111ba8b1. Checks:2 OK, 1 NOTE. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 24 2025 |
R-4.5-linux-x86_64 | NOTE | Mar 24 2025 |
R-4.4-linux-x86_64 | OK | Mar 24 2025 |
Exports:as.PAFit_netfrom_igraphfrom_networkDynamicgenerate_BAgenerate_BBgenerate_ERgenerate_fit_onlygenerate_netgenerate_simulated_data_from_estimated_modelget_statisticsgraph_from_filegraph_to_fileJeongjoint_estimateNewmanonly_A_estimateonly_F_estimatePAFit_oneshotplot_contributiontest_linear_PAto_igraphto_networkDynamic
Dependencies:celestialclicodacolorspacecpp11dplyrevaluatefansifarvergenericsggplot2gluegtablehighrigraphisobandknitrlabelinglatticelifecyclemagicaxismagrittrmapprojmapsMASSMatrixmgcvmunsellnetworknetworkDynamicnetworkLiteNISTunitsnlmepillarpkgconfigplotrixplyrpracmaR6RANNRColorBrewerRcpprlangscalessmstatnet.commontibbletidyselectutf8vctrsVGAMviridisLitewithrxfunyaml
Citation
To cite PAFit in publications use:
Pham T, Sheridan P, Shimodaira H (2020). “PAFit: An R Package for the Non-Parametric Estimation of Preferential Attachment and Node Fitness in Temporal Complex Networks.” Journal of Statistical Software, 92(3), 1–30. doi:10.18637/jss.v092.i03.
If you use the package to estimate node fitnesses, please consider to cite also:
Pham T, Sheridan P, Shimodaira H (2016). “Joint Estimation of Preferential Attachment and Node Fitness in Growing Complex Networks.” Scientific Reports, 6, 32558 EP. doi:10.1038/srep32558.
If you use the package to estimate preferential attachment from a temporal network, please consider to cite also:
Pham T, Sheridan P, Shimodaira H (2015). “PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks.” PLOS ONE, 10, 1-18. doi:10.1371/journal.pone.0137796.
If you use the package to estimate preferential attachment from one network snapshot, please consider to cite also:
Pham T, Sheridan P, Shimodaira H (2021). “Non-parametric estimation of the preferential attachment function from one network snapshot.” Journal of Complex Networks, 9. doi:10.1093/comnet/cnab024.
Corresponding BibTeX entries:
@Article{, title = {{PAFit}: An {R} Package for the Non-Parametric Estimation of Preferential Attachment and Node Fitness in Temporal Complex Networks}, author = {Thong Pham and Paul Sheridan and Hidetoshi Shimodaira}, journal = {Journal of Statistical Software}, year = {2020}, volume = {92}, number = {3}, pages = {1--30}, doi = {10.18637/jss.v092.i03}, }
@Article{, author = {Thong Pham and Paul Sheridan and Hidetoshi Shimodaira}, journal = {Scientific Reports}, title = {Joint Estimation of Preferential Attachment and Node Fitness in Growing Complex Networks}, year = {2016}, month = {9}, volume = {6}, pages = {32558 EP}, publisher = {Nature Publishing Group}, doi = {10.1038/srep32558}, }
@Article{, author = {Thong Pham and Paul Sheridan and Hidetoshi Shimodaira}, journal = {PLOS ONE}, title = {PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks}, year = {2015}, month = {9}, volume = {10}, pages = {1-18}, publisher = {Public Library of Science}, doi = {10.1371/journal.pone.0137796}, }
@Article{, author = {Thong Pham and Paul Sheridan and Hidetoshi Shimodaira}, journal = {Journal of Complex Networks}, title = {Non-parametric estimation of the preferential attachment function from one network snapshot}, year = {2021}, month = {10}, volume = {9}, publisher = {Oxford University Press}, doi = {10.1093/comnet/cnab024}, }