Package: treediff 0.2.1

Nathalie Vialaneix

treediff: Testing Differences Between Families of Trees

Perform test to detect differences in structure between families of trees. The method is based on cophenetic distances and aggregated Student's tests.

Authors:Nathalie Vialaneix [aut, cre], Gwendaelle Cardenas [aut], Marie Chavent [aut], Sylvain Foissac [aut], Pierre Neuvial [aut], Nathanael Randriamihamison [aut]

treediff_0.2.1.tar.gz
treediff_0.2.1.tar.gz(r-4.5-noble)treediff_0.2.1.tar.gz(r-4.4-noble)
treediff_0.2.1.tgz(r-4.4-emscripten)treediff_0.2.1.tgz(r-4.3-emscripten)
treediff.pdf |treediff.html
treediff/json (API)
NEWS

# Install 'treediff' in R:
install.packages('treediff', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 216 downloads 5 exports 119 dependencies

Last updated 10 months agofrom:7aefbca0b7. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 14 2024
R-4.5-linuxOKDec 14 2024

Exports:clusterTreeHiC2TreeHiCDOCDataSetnormalizeCounttreediff

Dependencies:abindadjclustaggregationaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsbriocalibratecallrcapusheclicodetoolscolorspacecowplotcpp11crayoncsawcurldata.tableDelayedArraydendextenddescdiffobjdigestdplyredgeRevaluatefansifarverformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegridExtragtablegtoolsHiCcompareHiCDOChttrInteractionSetIRangesisobandjsonliteKernSmoothlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmetapodmgcvmimemultiHiCcomparemunsellnlmeopensslpbapplypheatmappillarpkgbuildpkgconfigpkgloadplyrpraiseprocessxpspurrrqqmanR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5libRhtslibrlangrprojrootRsamtoolsS4ArraysS4VectorsscalessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsystestthattibbletidyselectUCSC.utilsutf8vctrsviridisviridisLitewaldowithrXVectorzlibbioc