Package: treediff 0.2.3

Nathalie Vialaneix

treediff: Testing Differences Between Families of Trees

Perform test to detect differences in structure between families of trees. The method is based on cophenetic distances and aggregated Student's tests.

Authors:Nathalie Vialaneix [aut, cre], Gwendaelle Cardenas [aut], Marie Chavent [aut], Sylvain Foissac [aut], Elise Maigne [aut], Pierre Neuvial [aut], Nathanael Randriamihamison [aut]

treediff_0.2.3.tar.gz
treediff_0.2.3.tar.gz(r-4.7-any)treediff_0.2.3.tar.gz(r-4.6-any)
treediff_0.2.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
treediff/json (API)

# Install 'treediff' in R:
install.packages('treediff', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Pkgdown/docs site:https://scales.pages-forge.inrae.fr

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 291 downloads 5 exports 95 dependencies

Last updated from:9d16addf19. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK322
source / vignettesOK236
linux-release-x86_64OK316
wasm-releaseOK157

Exports:clusterTreeHiC2TreeHiCDataSetnormalizeCounttreediff

Dependencies:abindadjclustBHBiobaseBiocGenericsBiocParallelBiostringsbitopsbriocallrcapusheclicodetoolscpp11crayoncsawdata.tableDelayedArraydendextenddescdiffobjdplyredgeRevaluatefarverformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegridExtragtablegtoolsHiCParserInteractionSetIRangesisobandjsonlitelabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmetapodotelpbapplypillarpkgbuildpkgconfigpkgloadplyrpraiseprocessxpspurrrR6RColorBrewerRcppRcppArmadilloreshape2RhtslibrlangrprojrootRsamtoolsS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimenttestthattibbletidyselectutf8vctrsviridisviridisLitewaldowithrXVector