Package: treediff
Title: Testing Differences Between Families of Trees
Version: 0.2.3
Date: 2026-06-08
Authors@R: 
    c(person("Nathalie", "Vialaneix", , "nathalie.vialaneix@inrae.fr", 
             role = c("aut", "cre"), 
             comment = c(ORCID = "0000-0003-1156-0639")),
      person("Gwendaelle", "Cardenas", , , role = "aut"),
      person("Marie", "Chavent", , "marie.chavent@u-bordeaux.fr", role = "aut", comment = c(ORCID = "0000-0001-6774-597X")),
      person("Sylvain", "Foissac", , "sylvain.foissac@inrae.fr", role = "aut", comment = c(ORCID = "0000-0002-2631-5356")),
      person("Elise", "Maigne", , "elise.maigne@inrae.fr", role = "aut"),
      person("Pierre", "Neuvial", , "pierre.neuvial@math.univ-toulouse.fr", 
             role = "aut", comment = c(ORCID = "0000-0003-3584-9998")),
      person("Nathanael", "Randriamihamison", , , role = "aut"))
Description: Perform test to detect differences in structure between
        families of trees. The method is based on cophenetic distances
        and aggregated Student's tests.
Depends: R (>= 4.0.0)
Imports: adjclust, BiocGenerics, csaw, data.table, dplyr,
        InteractionSet, limma, methods, stats, SummarizedExperiment,
        reshape2, testthat, rlang, HiCParser, purrr
License: GPL (>= 3)
Encoding: UTF-8
Suggests: knitr, rmarkdown
URL: https://scales.pages-forge.inrae.fr/treediff,
        https://forge.inrae.fr/scales/treediff
BugReports: https://forge.inrae.fr/scales/treediff/-/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-07-08 08:55:40 UTC; root
Author: Nathalie Vialaneix [aut, cre] (ORCID:
        <https://orcid.org/0000-0003-1156-0639>), Gwendaelle Cardenas
        [aut], Marie Chavent [aut] (ORCID:
        <https://orcid.org/0000-0001-6774-597X>), Sylvain Foissac [aut]
        (ORCID: <https://orcid.org/0000-0002-2631-5356>), Elise Maigne
        [aut], Pierre Neuvial [aut] (ORCID:
        <https://orcid.org/0000-0003-3584-9998>), Nathanael
        Randriamihamison [aut]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2026-06-08 17:40:02 UTC
RemoteUrl: https://github.com/cran/treediff
RemoteRef: HEAD
RemoteSha: 9d16addf197283ce07ca3ee28108998ac6ef8c84