Package: swfscMisc 1.6.5

Eric Archer

swfscMisc: Miscellaneous Functions for Southwest Fisheries Science Center

Collection of conversion, analytical, geodesic, mapping, and plotting functions. Used to support packages and code written by researchers at the Southwest Fisheries Science Center of the National Oceanic and Atmospheric Administration.

Authors:Eric Archer [aut, cre]

swfscMisc_1.6.5.tar.gz
swfscMisc_1.6.5.tar.gz(r-4.5-noble)swfscMisc_1.6.5.tar.gz(r-4.4-noble)
swfscMisc_1.6.5.tgz(r-4.4-emscripten)swfscMisc_1.6.5.tgz(r-4.3-emscripten)
swfscMisc.pdf |swfscMisc.html✨
swfscMisc/json (API)

# Install 'swfscMisc' in R:
install.packages('swfscMisc', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ericarcher/swfscmisc/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

jagscpp

5.13 score 3 stars 20 packages 98 scripts 1.5k downloads 58 exports 73 dependencies

Last updated 1 years agofrom:80b178f8f0. Checks:2 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 05 2025
R-4.5-linuxOKJan 05 2025

Exports:affin.propautoUnitsbearingbox.areabracescatSpatInterpcentral.quantilecircle.polygoncolor.nameconvert.angleconvert.distancecopy.tricrossing.pointdatumdestinationdistancedistSmrydiversityfisher.pgeometric.meanggBiplotharmonic.meanimdoimdoPlotintersectingPointinvLogOddsinvOddsisBetweenlab.widlat.lon.axeslogOddsmonth2Seasonna.countoddsone.argperpDistperpPointplotAssignmentspValrow.col.page.fitrunjags2listscatterdensscatterhistsetupClusterssex.symbolssn.deltasn.locationsn.m0sn.meansn.modesn.skewnesssn.variancestouffer.ptransparentuniform.testweighted.fisher.pwhich.nearestzero.pad

Dependencies:abindclassclassIntcliclueclustercodacolorspacecpp11DBIdeldirdplyre1071fansifarverfBasicsgenericsggplot2ggrepelgluegssgtableHDIntervaligraphisobandKernSmoothkknnlabelinglatticelifecyclemagrittrMASSMatrixmgcvmodeestmunsellnlmepillarpkgconfigpolyclipproxypurrrR6RColorBrewerRcpprlangrmutilrpartrunjagss2scalessfspatialspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstablestablediststatipstringistringrtibbletidyrtidyselecttimeDatetimeSeriesunitsutf8vctrsviridisLitewithrwk

Readme and manuals

Help Manual

Help pageTopics
Affinity Propagationaffin.prop
Auto Time Interval UnitsautoUnits
Calculate Bearing Between Two Positionsbearing
Area of a Boxbox.area
Bracesbraces
Categorical Spatial InterpolationcatSpatInterp
Central Quantilecentral.quantile
Circle Polygon (on Earth)circle.polygon
Color Namecolor.name
Angle Conversionconvert.angle
Distance Conversionconvert.distance
Copy Matrix Trianglescopy.tri
Crossing Pointcrossing.point
Datumdatum
Destination on Sphere or Ellipsoiddestination
Distance Between Coordinatesdistance
Distribution summarydistSmry
Unbiased Estimate of Diversitydiversity
Fisher's Method p-valuefisher.p
Geometric Meangeometric.mean
ggBiplotggBiplot
Harmonic Meanharmonic.mean
Iterative Missing Data Optimization (IMDO)imdo imdoPlot
Intersecting PointintersectingPoint
BetweenisBetween
Label Widthlab.wid
Latitude and Longitude axeslat.lon.axes
Convert Months to Seasonsmonth2Season
Count NAsna.count
Odds ConversioninvLogOdds invOdds logOdds odds
One Argumentone.arg
Perpendicular DistanceperpDist
Perpendicular PointperpPoint
Plot assignment distributionsplotAssignments
Permutation Test P-valuepVal
Rounding Numbers for Data Framesceiling ceiling.data.frame floor floor.data.frame round round.data.frame signif signif.data.frame trunc trunc.data.frame
Number of Rows and Columns on Pagerow.col.page.fit
Convert runjags posterior to listrunjags2list
Scatter Plot with Density Marginsscatterdens scatterhist
Setup ClusterssetupClusters
Sex Symbolssex.symbols
Skew-Normal parameter computationsn.delta sn.location sn.m0 sn.mean sn.mode sn.params sn.skewness sn.variance
Stouffer's Method p-valuestouffer.p
'swfscMisc' packageswfscMisc-package swfscMisc
Transparent Colorstransparent
Uniform Distribution Testuniform.test
Weighted Fisher's Method p-valueweighted.fisher.p
Which Nearestwhich.nearest
Zero Pad Integerszero.pad