This package is considered a duplicate. The official version of this package is found at:https://helixcn.r-universe.dev/spaa

Package: spaa 0.2.5

Jinlong Zhang

spaa: SPecies Association Analysis

Miscellaneous functions for analysing species association and niche overlap.

Authors:Jinlong Zhang [aut, cre]

# Install 'spaa' in R:

install.packages('spaa', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

On CRAN:

Last updated from:c49f50371c. Checks:4 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	104
source / vignettes	OK	139
linux-release-x86_64	OK	110
wasm-release	OK	87

Dependencies:

Help page	Topics
SPecies Association Analysis	spaa-package spaa
Convert field records to community matrix	data2mat
A sample dataset for a community	datasample
Degree to decimal	deg2dec
Convert distance matrix to pairwised list	dist2list
Compute species' relative frequency	freq.calc
Hight precision Great circle distance between two places	geodist
Convert vector of XY labels to label matrix	lab.mat
Low precision Great circle distance between two places	lgeodist
Convert pairwise list to distance matrix	list2dist
Niche overlap between each pair of species	niche.overlap
Boostrap niche overlap indices	niche.overlap.boot
Boostrap the niche overlap indices	niche.overlap.boot.pair
Compute niche overlap index between two species	niche.overlap.pair
Niche width	niche.width
Analyzing species association	sp.assoc
Species association between each pair of species	sp.pair
A sample dataframe showing species taxonomic information (Deprecated)	splist
Subset species based on relative frequency	sub.sp.matrix
A sample dataset s	testdata
Calculating species turnover	turnover
Generating vector of XY labels	XYname