{ "_id": "6a2e75a73efcd9bda431524c", "Package": "spaa", "Type": "Package", "Title": "SPecies Association Analysis", "Version": "0.2.5", "Date": "2024-12-23", "Authors@R": "person(\"Jinlong\", \"Zhang\", role = c(\"aut\", \"cre\"),\nemail = \"jinlongzhang01@gmail.com\")", "Author": "Jinlong Zhang [aut, cre]", "Maintainer": "Jinlong Zhang ", "Description": "Miscellaneous functions for analysing species association\nand niche overlap.", "License": "GPL-2", "LazyLoad": "yes", "URL": "https://github.com/helixcn/spaa", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-14 09:32:16 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-01-08 07:30:02 UTC", "RemoteUrl": "https://github.com/cran/spaa", "RemoteRef": "HEAD", "RemoteSha": "c49f50371cdfe567611899e773de4ba79da7ddb4", "MD5sum": "d1ebe294dbe4bf740853400dfe102f06", "_user": "cran", "_type": "src", "_file": "spaa_0.2.5.tar.gz", "_fileid": "32fb5aea79d891796d28a1155f315363f44f3b56bb2228c260577af438ee9472", "_filesize": 154775, "_sha256": "32fb5aea79d891796d28a1155f315363f44f3b56bb2228c260577af438ee9472", "_created": "2026-06-14T09:32:16.000Z", "_published": "2026-06-14T09:34:31.235Z", "_distro": "noble", "_jobs": [ { "job": 81266590708, "time": 97, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7619687002" }, { "job": 81266590710, "time": 101, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7619687484" }, { "job": 81266428063, "time": 144, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7619673924" }, { "job": 81266590701, "time": 88, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7619685938" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27494581239", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/spaa", "_commit": { "id": "c49f50371cdfe567611899e773de4ba79da7ddb4", "author": "Jinlong Zhang ", "committer": "cran-robot ", "message": "version 0.2.5\n", "time": 1736321402 }, "_maintainer": { "name": "Jinlong Zhang", "email": "jinlongzhang01@gmail.com", "login": "helixcn", "twitter": "@jinlongzhang01", "description": "Ecologist working on species distribution", "uuid": 9744361 }, "_registered": true, "_dependencies": [ { "package": "vegan", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "helixcn", "count": 7, "uuid": 9744361 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 606, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 646, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spaa" }, "_mentions": 9, "_devurl": "https://github.com/helixcn/spaa", "_searchresults": 165, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/spaa.html", "manual.pdf" ], "_homeurl": "https://github.com/helixcn/spaa", "_realowner": "helixcn", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2010-05-17" }, { "version": "0.1.1", "date": "2010-06-01" }, { "version": "0.1.2", "date": "2010-08-11" }, { "version": "0.2.0", "date": "2012-10-29" }, { "version": "0.2.1", "date": "2013-08-23" }, { "version": "0.2.2", "date": "2016-06-09" }, { "version": "0.2.5", "date": "2025-01-08" } ], "_exports": [ "data2mat", "deg2dec", "dist2list", "freq.calc", "geodist", "lab.mat", "lgeodist", "list2dist", "niche.overlap", "niche.overlap.boot", "niche.overlap.boot.pair", "niche.overlap.pair", "niche.width", "sp.assoc", "sp.pair", "sub.sp.matrix", "turnover", "XYname" ], "_datasets": [ { "name": "datasample", "title": "A sample dataset for a community", "object": "datasample", "file": "datasample.rda", "class": [ "data.frame" ], "fields": [ "Castanopsis.eyrei", "Schima.superba", "Rhododendron.ovatum", "Cyclobalanopsis.glauca", "Daphniphyllum.oldhamii", "Loropetalum.chinensis", "Pinus.massoniana", "Rhododendron.latoucheae", "Vaccinium.bracteatum", "Lithocarpus.glaber", "Syzygium.buxifolium", "Castanopsis.tibetana", "Castanopsis.fargesii", "Photinia.serrulata" ], "rows": 8, "table": true, "tojson": true }, { "name": "splist", "title": "A sample dataframe showing species taxonomic information (Deprecated)", "object": "splist", "file": "splist.rda", "class": [ "data.frame" ], "fields": [ "species", "genera", "family" ], "rows": 9, "table": true, "tojson": true }, { "name": "testdata", "title": "A sample dataset s", "object": "testdata", "file": "testdata.rda", "class": [ "data.frame" ], "fields": [ "plotname", "species", "abundance" ], "rows": 11, "table": true, "tojson": true } ], "_help": [ { "page": "spaa-package", "title": "SPecies Association Analysis", "topics": [ "spaa-package", "spaa" ] }, { "page": "data2mat", "title": "Convert field records to community matrix", "topics": [ "data2mat" ] }, { "page": "datasample", "title": "A sample dataset for a community", "topics": [ "datasample" ] }, { "page": "deg2dec", "title": "Degree to decimal", "topics": [ "deg2dec" ] }, { "page": "dist2list", "title": "Convert distance matrix to pairwised list", "topics": [ "dist2list" ] }, { "page": "freq.calc", "title": "Compute species' relative frequency", "topics": [ "freq.calc" ] }, { "page": "geodist", "title": "Hight precision Great circle distance between two places", "topics": [ "geodist" ] }, { "page": "lab.mat", "title": "Convert vector of XY labels to label matrix", "topics": [ "lab.mat" ] }, { "page": "lgeodist", "title": "Low precision Great circle distance between two places", "topics": [ "lgeodist" ] }, { "page": "list2dist", "title": "Convert pairwise list to distance matrix", "topics": [ "list2dist" ] }, { "page": "niche.overlap", "title": "Niche overlap between each pair of species", "topics": [ "niche.overlap" ] }, { "page": "niche.overlap.boot", "title": "Boostrap niche overlap indices", "topics": [ "niche.overlap.boot" ] }, { "page": "niche.overlap.boot.pair", "title": "Boostrap the niche overlap indices", "topics": [ "niche.overlap.boot.pair" ] }, { "page": "niche.overlap.pair", "title": "Compute niche overlap index between two species", "topics": [ "niche.overlap.pair" ] }, { "page": "niche.width", "title": "Niche width", "topics": [ "niche.width" ] }, { "page": "sp.assoc", "title": "Analyzing species association", "topics": [ "sp.assoc" ] }, { "page": "sp.pair", "title": "Species association between each pair of species", "topics": [ "sp.pair" ] }, { "page": "splist", "title": "A sample dataframe showing species taxonomic information (Deprecated)", "topics": [ "splist" ] }, { "page": "sub.sp.matrix", "title": "Subset species based on relative frequency", "topics": [ "sub.sp.matrix" ] }, { "page": "testdata", "title": "A sample dataset s", "topics": [ "testdata" ] }, { "page": "turnover", "title": "Calculating species turnover", "topics": [ "turnover" ] }, { "page": "XYname", "title": "Generating vector of XY labels", "topics": [ "XYname" ] } ], "_readme": "https://github.com/cran/spaa/raw/HEAD/README.md", "_rundeps": [], "_score": 4.347817712708912, "_indexed": false, "_nocasepkg": "spaa", "_universes": [ "cran" ], "_indexurl": "https://helixcn.r-universe.dev/spaa", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.5", "date": "2026-06-14T09:33:55.000Z", "distro": "noble", "commit": "c49f50371cdfe567611899e773de4ba79da7ddb4", "fileid": "e2f3cfe51bbab24297989e24d59bdb1da37968137a0c109500cc1653486276ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27494581239" }, { "r": "4.6.0", "os": "linux", "version": "0.2.5", "date": "2026-06-14T09:33:58.000Z", "distro": "noble", "commit": "c49f50371cdfe567611899e773de4ba79da7ddb4", "fileid": "f74d59473388714d77263896d1854dc5b24b48451d687a7588ba25946e16dbb8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27494581239" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.5", "date": "2026-06-14T09:33:57.000Z", "commit": "c49f50371cdfe567611899e773de4ba79da7ddb4", "fileid": "1c78b77b6d5e0251edabcaa185889cd96cc6537b91ea7c4fa89b6db32c4f5413", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27494581239" } ] }