Package: simer 0.9.0.5
simer: Data Simulation for Life Science and Breeding
Data simulator including genotype, phenotype, pedigree, selection and reproduction in R. It simulates most of reproduction process of animals or plants and provides data for GS (Genomic Selection), GWAS (Genome-Wide Association Study), and Breeding. For ADI model, please see Kao C and Zeng Z (2002) <doi:10.1093/genetics/160.3.1243>. For build.cov, please see B. D. Ripley (1987) <ISBN:9780470009604>.
Authors:
simer_0.9.0.5.tar.gz
simer_0.9.0.5.tar.gz(r-4.5-noble)simer_0.9.0.5.tar.gz(r-4.4-noble)
simer.pdf |simer.html✨
simer/json (API)
# Install 'simer' in R: |
install.packages('simer', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/xiaolei-lab/simer/issues
Last updated 3 months agofrom:9248cd005a. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 31 2024 |
R-4.5-linux-x86_64 | OK | Oct 31 2024 |
Exports:annotationbuild.covcal.effcheckEnvformat_timegenerate.mapgenerate.popgeno.cvt1geno.cvt2genotypegetfamGxG.networkIndPerGenlogging.loglogging.printmatemate.2waycromate.3waycromate.4waycromate.assortmate.backcromate.clonemate.dhmate.disassortmate.randexselfmate.randmatemate.selfpolmate.userpedparam.annotparam.genoparam.globalparam.phenoparam.reprodparam.selparam.simerphenotypeprint_inforemove_bigmatrixreproducesselectssimersimer.Datasimer.Data.Bfile2MVPsimer.Data.cHIBLUPsimer.Data.Envsimer.Data.Genosimer.Data.Imputesimer.Data.Jsonsimer.Data.Kinsimer.Data.Mapsimer.Data.MVP2Bfilesimer.Data.MVP2MVPsimer.Data.Pedsimer.Data.Phenosimer.Data.SELINDsimer.Versionwrite.file
Dependencies:BHbigmemorybigmemory.srijsonlitelatticeMASSMatrixRcppRcppArmadilloRcppProgressuuid