{
  "_id": "6ac39acf192c10f297258fe3",
  "Package": "simer",
  "Title": "Data Simulation for Life Science and Breeding",
  "Version": "1.0.0",
  "Date": "2025-2-25",
  "Authors@R": "c( person(\"Dong\", \"Yin\", role = \"aut\"),\nperson(\"Xuanning\", \"Zhang\", role = \"aut\"),\nperson(\"Lilin\", \"Yin\", role = \"aut\"),\nperson(\"Haohao\", \"Zhang\", role = \"aut\"),\nperson(\"Zhenshuang\", \"Tang\", role = \"aut\"),\nperson(\"Jingya\", \"Xu\", role = \"aut\"),\nperson(\"Xiaohui\", \"Yuan\", role = \"aut\"),\nperson(\"Xiang\", \"Zhou\", role = \"aut\"),\nperson(\"Xinyun\", \"Li\", role = \"aut\"),\nperson(\"Shuhong\", \"Zhao\", role = \"aut\"),\nperson(\"Xiaolei\", \"Liu\", role = c(\"cre\", \"aut\", \"cph\"), email = \"xll198708@gmail.com\"))",
  "Description": "Data simulator including genotype, phenotype, pedigree,\nselection and reproduction in R. It simulates most of\nreproduction process of animals or plants and provides data for\nGS (Genomic Selection), GWAS (Genome-Wide Association Study),\nand Breeding. For ADI model, please see Kao C and Zeng Z (2002)\n<doi:10.1093/genetics/160.3.1243>. For build.cov, please see B.\nD. Ripley (1987) <ISBN:9780470009604>.",
  "License": "Apache License 2.0",
  "URL": "https://github.com/xiaolei-lab/SIMER",
  "BugReports": "https://github.com/xiaolei-lab/SIMER/issues",
  "RoxygenNote": "7.3.2",
  "Encoding": "UTF-8",
  "NeedsCompilation": "yes",
  "Maintainer": "Xiaolei Liu <xll198708@gmail.com>",
  "Packaged": {
    "Date": "2026-10-05 12:35:23 UTC",
    "User": "root"
  },
  "Author": "Dong Yin [aut], Xuanning Zhang [aut], Lilin Yin [aut], Haohao\nZhang [aut], Zhenshuang Tang [aut], Jingya Xu [aut], Xiaohui\nYuan [aut], Xiang Zhou [aut], Xinyun Li [aut], Shuhong Zhao\n[aut], Xiaolei Liu [cre, aut, cph]",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-02-26 10:10:02 UTC",
  "RemoteUrl": "https://github.com/cran/simer",
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  "_expires": "2027-01-13T12:40:45.000Z",
  "_created": "2026-10-05T12:35:23.000Z",
  "_published": "2026-10-05T12:40:47.352Z",
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    "name": "cran",
    "followers": 631,
    "description": "Unofficial read-only mirror of all CRAN R packages"
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/simer"
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  "_devurl": "https://github.com/xiaolei-lab/simer",
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  "_topics": [
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    "extra/citation.html",
    "extra/citation.json",
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  "_exports": [
    "annotation",
    "bigt",
    "build.cov",
    "cal.eff",
    "checkEnv",
    "format_time",
    "generate.map",
    "generate.pop",
    "geno.cvt1",
    "geno.cvt2",
    "genotype",
    "getfam",
    "GxG.network",
    "IndPerGen",
    "logging.log",
    "logging.print",
    "mate",
    "mate.2waycro",
    "mate.3waycro",
    "mate.4waycro",
    "mate.assort",
    "mate.backcro",
    "mate.clone",
    "mate.dh",
    "mate.disassort",
    "mate.randexself",
    "mate.randmate",
    "mate.selfpol",
    "mate.userped",
    "param.annot",
    "param.geno",
    "param.global",
    "param.pheno",
    "param.reprod",
    "param.sel",
    "param.simer",
    "phenotype",
    "print_info",
    "remove_bigmatrix",
    "reproduces",
    "selects",
    "simer",
    "simer.Data",
    "simer.Data.Bfile2MVP",
    "simer.Data.cHIBLUP",
    "simer.Data.Env",
    "simer.Data.Geno",
    "simer.Data.Impute",
    "simer.Data.Json",
    "simer.Data.Map",
    "simer.Data.MVP2Bfile",
    "simer.Data.MVP2MVP",
    "simer.Data.Ped",
    "simer.Data.Pheno",
    "simer.Data.SELIND",
    "simer.Version",
    "write.file"
  ],
  "_datasets": [
    {
      "name": "pop.geno",
      "title": "Raw genotype matrix from outside in simdata",
      "object": "simdata",
      "file": "simdata.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 100,
      "table": true,
      "tojson": true
    },
    {
      "name": "pop.map",
      "title": "Map file from outside in simdata",
      "object": "simdata",
      "file": "simdata.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "SNP",
        "Chrom",
        "BP",
        "ALT",
        "REF"
      ],
      "rows": 10000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "annotation",
      "title": "Annotation simulation",
      "topics": [
        "annotation"
      ]
    },
    {
      "page": "bigt",
      "title": "Genotype transportor",
      "topics": [
        "bigt"
      ]
    },
    {
      "page": "build.cov",
      "title": "Correlation building",
      "topics": [
        "build.cov"
      ]
    },
    {
      "page": "cal.eff",
      "title": "QTN genetic effects",
      "topics": [
        "cal.eff"
      ]
    },
    {
      "page": "checkEnv",
      "title": "Environmental factor checking",
      "topics": [
        "checkEnv"
      ]
    },
    {
      "page": "generate.map",
      "title": "Marker information",
      "topics": [
        "generate.map"
      ]
    },
    {
      "page": "generate.pop",
      "title": "Population generator",
      "topics": [
        "generate.pop"
      ]
    },
    {
      "page": "geno.cvt1",
      "title": "Genotype code convertor 1",
      "topics": [
        "geno.cvt1"
      ]
    },
    {
      "page": "geno.cvt2",
      "title": "Genotype code convertor 2",
      "topics": [
        "geno.cvt2"
      ]
    },
    {
      "page": "genotype",
      "title": "Genotype simulation",
      "topics": [
        "genotype"
      ]
    },
    {
      "page": "getfam",
      "title": "Family index and within-family index",
      "topics": [
        "getfam"
      ]
    },
    {
      "page": "GxG.network",
      "title": "Genetic interaction network",
      "topics": [
        "GxG.network"
      ]
    },
    {
      "page": "IndPerGen",
      "title": "Individual number per generation",
      "topics": [
        "IndPerGen"
      ]
    },
    {
      "page": "logging.initialize",
      "title": "Logging initialization",
      "topics": [
        "logging.initialize"
      ]
    },
    {
      "page": "logging.log",
      "title": "Logging",
      "topics": [
        "logging.log"
      ]
    },
    {
      "page": "logging.print",
      "title": "Logging printer",
      "topics": [
        "logging.print"
      ]
    },
    {
      "page": "mate",
      "title": "Mate",
      "topics": [
        "mate"
      ]
    },
    {
      "page": "mate.2waycro",
      "title": "Two-way cross",
      "topics": [
        "mate.2waycro"
      ]
    },
    {
      "page": "mate.3waycro",
      "title": "Three-way cross",
      "topics": [
        "mate.3waycro"
      ]
    },
    {
      "page": "mate.4waycro",
      "title": "Four-way cross process",
      "topics": [
        "mate.4waycro"
      ]
    },
    {
      "page": "mate.assort",
      "title": "Assortative mating",
      "topics": [
        "mate.assort"
      ]
    },
    {
      "page": "mate.backcro",
      "title": "Back cross",
      "topics": [
        "mate.backcro"
      ]
    },
    {
      "page": "mate.clone",
      "title": "Clone",
      "topics": [
        "mate.clone"
      ]
    },
    {
      "page": "mate.dh",
      "title": "Doubled haploid",
      "topics": [
        "mate.dh"
      ]
    },
    {
      "page": "mate.disassort",
      "title": "Disassortative mating",
      "topics": [
        "mate.disassort"
      ]
    },
    {
      "page": "mate.randexself",
      "title": "Random mating excluding self-pollination",
      "topics": [
        "mate.randexself"
      ]
    },
    {
      "page": "mate.randmate",
      "title": "Random mating",
      "topics": [
        "mate.randmate"
      ]
    },
    {
      "page": "mate.selfpol",
      "title": "Self-pollination",
      "topics": [
        "mate.selfpol"
      ]
    },
    {
      "page": "mate.userped",
      "title": "User-specified pedigree mating",
      "topics": [
        "mate.userped"
      ]
    },
    {
      "page": "param.annot",
      "title": "Annotation parameters generator",
      "topics": [
        "param.annot"
      ]
    },
    {
      "page": "param.geno",
      "title": "Genotype parameters generator",
      "topics": [
        "param.geno"
      ]
    },
    {
      "page": "param.global",
      "title": "Global parameters generator",
      "topics": [
        "param.global"
      ]
    },
    {
      "page": "param.pheno",
      "title": "Phenotype parameters generator",
      "topics": [
        "param.pheno"
      ]
    },
    {
      "page": "param.reprod",
      "title": "Reproduction parameters generator",
      "topics": [
        "param.reprod"
      ]
    },
    {
      "page": "param.sel",
      "title": "Selection parameters generator",
      "topics": [
        "param.sel"
      ]
    },
    {
      "page": "param.simer",
      "title": "Parameter generator",
      "topics": [
        "param.simer"
      ]
    },
    {
      "page": "phenotype",
      "title": "Phenotype simulation",
      "topics": [
        "phenotype"
      ]
    },
    {
      "page": "pop.geno",
      "title": "Raw genotype matrix from outside in simdata",
      "topics": [
        "pop.geno"
      ]
    },
    {
      "page": "pop.map",
      "title": "Map file from outside in simdata",
      "topics": [
        "pop.map"
      ]
    },
    {
      "page": "remove_bigmatrix",
      "title": "Big.matrix removing",
      "topics": [
        "remove_bigmatrix"
      ]
    },
    {
      "page": "reproduces",
      "title": "Reproduction",
      "topics": [
        "reproduces"
      ]
    },
    {
      "page": "selects",
      "title": "Selection",
      "topics": [
        "selects"
      ]
    },
    {
      "page": "simer",
      "title": "Simer",
      "topics": [
        "simer"
      ]
    },
    {
      "page": "simer.Data",
      "title": "Data handling",
      "topics": [
        "simer.Data"
      ]
    },
    {
      "page": "simer.Data.Bfile2MVP",
      "title": "simer.Data.Bfile2MVP: To transform plink binary data to MVP package",
      "topics": [
        "simer.Data.Bfile2MVP"
      ]
    },
    {
      "page": "simer.Data.cHIBLUP",
      "title": "Genetic evaluation",
      "topics": [
        "simer.Data.cHIBLUP"
      ]
    },
    {
      "page": "simer.Data.Env",
      "title": "Environmental factor selection",
      "topics": [
        "simer.Data.Env"
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    },
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      "title": "Genotype data quality control",
      "topics": [
        "simer.Data.Geno"
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      "page": "simer.Data.Impute",
      "title": "Genotype data imputation",
      "topics": [
        "simer.Data.Impute"
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      "page": "simer.Data.Json",
      "title": "Data quality control",
      "topics": [
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      "page": "simer.Data.Map",
      "title": "simer.Data.Map: To check map file",
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      "page": "simer.Data.MVP2MVP",
      "title": "Genotype data conversion",
      "topics": [
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      "title": "Pedigree data quality control",
      "topics": [
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      "topics": [
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      "page": "simer.Data.SELIND",
      "title": "Selection index construction",
      "topics": [
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    {
      "page": "simer.Version",
      "title": "Simer version",
      "topics": [
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