Package: sfinx 1.7.99
Kevin Titeca
sfinx: Straightforward Filtering Index for AP-MS Data Analysis (SFINX)
The straightforward filtering index (SFINX) identifies true positive protein interactions in a fast, user-friendly, and highly accurate way. It is not only useful for the filtering of affinity purification - mass spectrometry (AP-MS) data, but also for similar types of data resulting from other co-complex interactomics technologies, such as TAP-MS, Virotrap and BioID. SFINX can also be used via the website interface at <http://sfinx.ugent.be>.
Authors:
sfinx_1.7.99.tar.gz
sfinx_1.7.99.tar.gz(r-4.5-noble)sfinx_1.7.99.tar.gz(r-4.4-noble)
sfinx_1.7.99.tgz(r-4.4-emscripten)sfinx_1.7.99.tgz(r-4.3-emscripten)
sfinx.pdf |sfinx.html✨
sfinx/json (API)
| # Install 'sfinx' in R: |
| install.packages('sfinx', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- BaitIdentityExampleFile - A vector with proteins of interest (baits) for the TIP49 dataset.
- DataInputExampleFile - The TIP49 dataset of protein interactions (AP-MS).
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:e88d15b385. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 07 2024 |
| R-4.5-linux | OK | Dec 07 2024 |
Exports:sfinx
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A vector with proteins of interest (baits) for the TIP49 dataset. | BaitIdentityExampleFile |
| The TIP49 dataset of protein interactions (AP-MS). | DataInputExampleFile |
| SFINX (Straightforward Filtering INdeX). | sfinx |