Package: selfingTree 0.2

Frank Technow

selfingTree: Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing

A probability tree allows to compute probabilities of complex events, such as genotype probabilities in intermediate generations of inbreeding through recurrent self-fertilization (selfing). This package implements functionality to compute probability trees for two- and three-marker genotypes in the F2 to F7 selfing generations. The conditional probabilities are derived automatically and in symbolic form. The package also provides functionality to extract and evaluate the relevant probabilities.

Authors:Frank Technow [aut, cre]

selfingTree_0.2.tar.gz
selfingTree_0.2.tar.gz(r-4.5-noble)selfingTree_0.2.tar.gz(r-4.4-noble)
selfingTree_0.2.tgz(r-4.4-emscripten)selfingTree_0.2.tgz(r-4.3-emscripten)
selfingTree.pdf |selfingTree.html
selfingTree/json (API)

# Install 'selfingTree' in R:
install.packages('selfingTree', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • F4 - Genotypes of one million simulated F4 lines.
  • map - Genetic map of the three markers in the F4 data set.

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 7 scripts 100 downloads 9 exports 3 dependencies

Last updated 10 years agofrom:6c6ce286ce. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 22 2024
R-4.5-linuxOKDec 22 2024

Exports:buildSelfingTreeevalProbextractProbsgenSubtree.2MgenSubtree.3MgetTargetshaploProb.2MhaploProb.3MnodeProbabilities

Dependencies:codetoolsforeachiterators