{
  "_id": "6a105b03acfb0bcc41ca3cae",
  "Package": "selfingTree",
  "Type": "Package",
  "Title": "Genotype Probabilities in Intermediate Generations of Inbreeding\nThrough Selfing",
  "Version": "0.2",
  "License": "BSD_3_clause + file LICENSE",
  "Copyright": "(c) 2014, Pioneer Hi-Bred International, Inc.",
  "Date": "2014-12-18",
  "Authors@R": "person(given = \"Frank\",family = \"Technow\",\t\t\nemail = \"Frank.Technow@pioneer.com\",\ncomment = \"Pioneer Hi-Bred International, Inc., Johnston, Iowa\", role = c(\"aut\",\"cre\"))",
  "Author": "Frank Technow [aut, cre] (Pioneer Hi-Bred International, Inc.,\nJohnston, Iowa)",
  "LazyData": "TRUE",
  "Maintainer": "Frank Technow <Frank.Technow@pioneer.com>",
  "Description": "A probability tree allows to compute probabilities of\ncomplex events, such as genotype probabilities in intermediate\ngenerations of inbreeding through recurrent self-fertilization\n(selfing). This package implements functionality to compute\nprobability trees for two- and three-marker genotypes in the F2\nto F7 selfing generations. The conditional probabilities are\nderived automatically and in symbolic form. The package also\nprovides functionality to extract and evaluate the relevant\nprobabilities.",
  "Packaged": {
    "Date": "2026-05-09 05:50:24 UTC",
    "User": "root"
  },
  "NeedsCompilation": "no",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2014-12-18 00:00:00 UTC",
  "RemoteUrl": "https://github.com/cran/selfingTree",
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  "_type": "src",
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  "_buildurl": "https://github.com/r-universe/cran/actions/runs/25593288499",
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  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/selfingTree",
  "_commit": {
    "id": "6c6ce286ce1a5da5ee53adfa2dd2954cab8a34f3",
    "author": "Frank Technow <Frank.Technow@pioneer.com>",
    "committer": "Gabor Csardi <csardi.gabor@gmail.com>",
    "message": "version 0.2\n",
    "time": 1418860800
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  "_maintainer": {
    "name": "Frank Technow",
    "email": "frank.technow@pioneer.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15.1",
      "role": "Depends"
    },
    {
      "package": "foreach",
      "role": "Depends"
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  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 192,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/selfingTree"
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  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/selfingTree.html",
    "manual.pdf"
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  "_cranurl": false,
  "_releases": [
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      "version": "0.2",
      "date": "2014-12-18"
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  ],
  "_exports": [
    "buildSelfingTree",
    "evalProb",
    "extractProbs",
    "genSubtree.2M",
    "genSubtree.3M",
    "getTargets",
    "haploProb.2M",
    "haploProb.3M",
    "nodeProbabilities"
  ],
  "_datasets": [
    {
      "name": "F4",
      "title": "Genotypes of one million simulated F4 lines.",
      "object": "F4",
      "class": [
        "matrix",
        "array"
      ],
      "fields": {},
      "rows": 1000000,
      "table": true,
      "tojson": true
    },
    {
      "name": "map",
      "title": "Genetic map of the three markers in the F4 data set.",
      "object": "map",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "selfingTree-package",
      "title": "Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing",
      "topics": [
        "selfingTree-package",
        "selfingTree"
      ]
    },
    {
      "page": "buildSelfingTree",
      "title": "Builds the probability tree",
      "topics": [
        "buildSelfingTree"
      ]
    },
    {
      "page": "evalProb",
      "title": "Evaluates the genotype probability",
      "topics": [
        "evalProb"
      ]
    },
    {
      "page": "extractProbs",
      "title": "Extracts conditional genotype probabilities",
      "topics": [
        "extractProbs"
      ]
    },
    {
      "page": "F4",
      "title": "Genotypes of one million simulated F4 lines.",
      "topics": [
        "F4"
      ]
    },
    {
      "page": "genSubtree",
      "title": "Generates a sub-tree",
      "topics": [
        "genSubtree.2M",
        "genSubtree.3M"
      ]
    },
    {
      "page": "getTargets",
      "title": "Obtain all possible genotypes that match a certain target configuration",
      "topics": [
        "getTargets"
      ]
    },
    {
      "page": "haploProb",
      "title": "Probability of observing the target haplotype given the parental genotype.",
      "topics": [
        "haploProb.2M",
        "haploProb.3M"
      ]
    },
    {
      "page": "map",
      "title": "Genetic map of the three markers in the F4 data set.",
      "topics": [
        "map"
      ]
    },
    {
      "page": "nodeProbabilities",
      "title": "Multiplies conditional probabilities along all branches of the tree",
      "topics": [
        "nodeProbabilities"
      ]
    }
  ],
  "_rundeps": [
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    "foreach",
    "iterators"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "selfingtree",
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