Package: scRNAtools 1.0

Qian Yang

scRNAtools: Single Cell RNA Sequencing Data Analysis Tools

We integrated the common analysis methods utilized in single cell RNA sequencing data, which included cluster method, principal components analysis (PCA), the filter of differentially expressed genes, pathway enrichment analysis and correlated analysis methods.

Authors:Qian Yang

scRNAtools_1.0.tar.gz
scRNAtools_1.0.tar.gz(r-4.5-noble)scRNAtools_1.0.tar.gz(r-4.4-noble)
scRNAtools_1.0.tgz(r-4.4-emscripten)scRNAtools_1.0.tgz(r-4.3-emscripten)
scRNAtools.pdf |scRNAtools.html
scRNAtools/json (API)

# Install 'scRNAtools' in R:
install.packages('scRNAtools', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 9 scripts 171 downloads 13 exports 126 dependencies

Last updated 6 years agofrom:1ebaa15d9e. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 22 2024
R-4.5-linuxOKNov 22 2024

Exports:scRNAtools_clusterscRNAtools_cor_mapscRNAtools_cor_map_rscRNAtools_DEGsAscRNAtools_Gene2exp_1scRNAtools_Gene3exp_1scRNAtools_GeneexpscRNAtools_Geneexp_1scRNAtools_inter_netscRNAtools_pcascRNAtools_pca_3DscRNAtools_PEAscRNAtools_tsne

Dependencies:ALLbackportsbase64encBiobaseBiocGenericsbitbit64bitopsbroombslibcachemcheckmateclicliprclustercodetoolscolorspaceConsensusClusterPluscorrplotcpp11crayondata.tabledigestdplyredgeRevaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsgeeMgeepackgenericsggformulaggplot2ggridgesggthemesglmnetgluegridExtragtablehavenhighrHmischmshtmlTablehtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonlitekinship2knitrlabelinglabelledlatticelifecyclelimmalocfitmagrittrMASSMatrixmemoiseMESSmgcvmimemosaicCoremunsellmvtnormnlmennetPerformanceAnalyticspillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRCurlreadrreshape2rlangrmarkdownRmiscrpartrstudioapiRtsnesassscalesscatterplot3dshapestatmodstringistringrsurvivaltibbletidyrtidyselecttinytexTPEAtzdbutf8vctrsviridisviridisLitevroomwithrxfunXMLxtsyamlzoo