Package: scNPM 1.0.6

Tao Liu

scNPM: Single-Cell Network Propensity Matching

Estimates and compares heterogeneous gene conditional-dependence networks from single-cell expression data. A latent Gaussian mixture and probit observation mechanism represent cellular heterogeneity and zero observations. Protein interaction information supplies edge-specific prior weights, while network propensity matching links cell clusters across conditions and guides adaptation. Staged inference freezes stable matching, disables feedback, and retains baseline-model samples for posterior group and directional differential edge selection. Functions assess balance, record criterion diagnostics, and visualize within-condition and differential networks.

Authors:Tao Liu [aut, cre]

scNPM_1.0.6.tar.gz
scNPM_1.0.6.zip(r-4.7-x86_64)scNPM_1.0.6.zip(r-4.7-arm64)scNPM_1.0.6.zip(r-4.6-x86_64)scNPM_1.0.6.zip(r-4.6-arm64)
scNPM_1.0.6.tar.gz(r-4.7-arm64)scNPM_1.0.6.tar.gz(r-4.7-x86_64)scNPM_1.0.6.tar.gz(r-4.6-arm64)scNPM_1.0.6.tar.gz(r-4.6-x86_64)
scNPM_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
scNPM/json (API)

# Install 'scNPM' in R:
install.packages('scNPM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/taostat1/scnpm_r_package/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

openblascppopenmp

1.70 score 6 exports 26 dependencies

Last updated from:44d9b4a0a6. Checks:10 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK167
linux-devel-x86_64OK147
source / vignettesOK236
linux-release-arm64OK129
linux-release-x86_64OK168
windows-devel-arm64OK243
windows-devel-x86_64OK197
windows-release-arm64OK410
windows-release-x86_64OK227
wasm-releaseOK123

Exports:compute_qf_smdplot_diff_networkplot_group_networkrun_scNPMselect_differential_edgesselect_group_edges

Dependencies:clicpp11farverggplot2ggrepelgluegtableigraphisobandlabelinglatticelifecyclemagrittrMatrixpkgconfigR6RColorBrewerRcppRcppArmadilloRcppParallelrlangS7scalesvctrsviridisLitewithr