Package: scNPM
Type: Package
Title: Single-Cell Network Propensity Matching
Version: 1.0.6
Date: 2026-10-02
Authors@R: c(
    person(
      given = "Tao",
      family = "Liu",
      email = "25210690190@m.fudan.edu.cn",
      role = c("aut", "cre")
    )
  )
Description: Estimates and compares heterogeneous gene
        conditional-dependence networks from single-cell expression
        data. A latent Gaussian mixture and probit observation
        mechanism represent cellular heterogeneity and zero
        observations. Protein interaction information supplies
        edge-specific prior weights, while network propensity matching
        links cell clusters across conditions and guides adaptation.
        Staged inference freezes stable matching, disables feedback,
        and retains baseline-model samples for posterior group and
        directional differential edge selection. Functions assess
        balance, record criterion diagnostics, and visualize
        within-condition and differential networks.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Imports: Rcpp (>= 1.0.10), Matrix, igraph (>= 1.3.0), ggplot2 (>=
        3.3.0), ggrepel (>= 0.9.0), scales (>= 1.2.0), stats, utils,
        tools
LinkingTo: Rcpp, RcppArmadillo (>= 0.12.6.4.0), RcppParallel (>= 5.1.7)
SystemRequirements: C++17, OpenMP
Depends: R (>= 4.0.0)
URL: https://github.com/taostat1/scNPM_R_package
BugReports: https://github.com/taostat1/scNPM_R_package/issues
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
NeedsCompilation: yes
Packaged: 2026-10-14 19:03:39 UTC; root
Author: Tao Liu [aut, cre]
Maintainer: Tao Liu <25210690190@m.fudan.edu.cn>
Repository: https://cran.r-universe.dev
Date/Publication: 2026-10-14 11:20:02 UTC
RemoteUrl: https://github.com/cran/scNPM
RemoteRef: HEAD
RemoteSha: 44d9b4a0a677da927c4a761432b121750b7c106c