Package: scDECO 0.1.0
scDECO: Estimating Dynamic Correlation
Implementations for two different Bayesian models of differential co-expression. scdeco.cop() fits the bivariate Gaussian copula model from Zichen Ma, Shannon W. Davis, Yen-Yi Ho (2023) <doi:10.1111/biom.13701>, while scdeco.pg() fits the bivariate Poisson-Gamma model from Zhen Yang, Yen-Yi Ho (2022) <doi:10.1111/biom.13457>.
Authors:
scDECO_0.1.0.tar.gz
scDECO_0.1.0.tar.gz(r-4.5-noble)scDECO_0.1.0.tar.gz(r-4.4-noble)
scDECO_0.1.0.tgz(r-4.4-emscripten)scDECO_0.1.0.tgz(r-4.3-emscripten)
scDECO.pdf |scDECO.html✨
scDECO/json (API)
# Install 'scDECO' in R: |
install.packages('scDECO', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yenyiho-lab/scdeco/issues
Last updated 6 months agofrom:346c753ac5. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 02 2024 |
R-4.5-linux | OK | Dec 02 2024 |
Exports:scdeco.copscdeco.pgscdeco.sim.copscdeco.sim.pg
Dependencies:clicodaexpmfansigenericsgluelatticelifecyclemagrittrMASSMatrixmsmmvtnormpillarpkgconfigrjagsrlangsurvivaltibbleutf8vctrs
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Copula dynamic correlation fitting function | scdeco.cop |
ZENCO Poisson Gamma dynamic correlation fitting function | scdeco.pg |
Simulating from copula model | scdeco.sim.cop |
Simulating from ZENCO Model | scdeco.sim.pg |