Package: scDECO 0.1.1

Anderson Bussing

scDECO: Estimating Dynamic Correlation

Implementations for two different Bayesian models of differential co-expression. scdeco.cop() fits the bivariate Gaussian copula model from Zichen Ma, Shannon W. Davis, Yen-Yi Ho (2023) <doi:10.1111/biom.13701>, while scdeco.pg() fits the bivariate Poisson-Gamma model from Zhen Yang, Yen-Yi Ho (2022) <doi:10.1111/biom.13457>.

Authors:Anderson Bussing [aut, cre], Yen-Yi Ho [aut, ths], Zichen Ma [aut], Zhen Yang [aut]

scDECO_0.1.1.tar.gz
scDECO_0.1.1.tar.gz(r-4.7-any)scDECO_0.1.1.tar.gz(r-4.6-any)
scDECO_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scDECO/json (API)
NEWS

# Install 'scDECO' in R:
install.packages('scDECO', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yenyiho-lab/scdeco/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

jagscpp

3.00 score 161 downloads 4 exports 20 dependencies

Last updated from:15e1b6eb28. Checks:4 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK147
source / vignettesOK217
linux-release-x86_64OK138
wasm-releaseOK111

Exports:scdeco.copscdeco.pgscdeco.sim.copscdeco.sim.pg

Dependencies:clicodaexpmgenericsgluelatticelifecyclemagrittrMASSMatrixmsmmvtnormpillarpkgconfigrjagsrlangsurvivaltibbleutf8vctrs

scDECO-Copula

Rendered fromscDECO-Copula.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2024-06-05
Started: 2024-06-05

scDECO-Poisson-Gamma

Rendered fromscDECO-Poisson-Gamma.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2024-06-05
Started: 2024-06-05