{
  "_id": "6a180c92acfb0bcc41dadcfc",
  "Package": "scDECO",
  "Type": "Package",
  "Title": "Estimating Dynamic Correlation",
  "Version": "0.1.1",
  "Authors@R": "c(person(given = \"Anderson\",\nfamily = \"Bussing\",\nrole = c(\"aut\", \"cre\"),\nemail = \"abussing@email.sc.edu\"),\nperson(given = \"Yen-Yi\",\nfamily = \"Ho\",\nrole = c(\"aut\", \"ths\"),\nemail = \"hoyen@stat.sc.edu\"),\nperson(given = \"Zichen\",\nfamily = \"Ma\",\nrole = \"aut\",\nemail = \"zma@colgate.edu\"),\nperson(given = \"Zhen\",\nfamily = \"Yang\",\nrole = \"aut\",\nemail = \"zheny@email.sc.edu\"))",
  "Description": "Implementations for two different Bayesian models of\ndifferential co-expression. scdeco.cop() fits the bivariate\nGaussian copula model from Zichen Ma, Shannon W. Davis, Yen-Yi\nHo (2023) <doi:10.1111/biom.13701>, while scdeco.pg() fits the\nbivariate Poisson-Gamma model from Zhen Yang, Yen-Yi Ho (2022)\n<doi:10.1111/biom.13457>.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "URL": "https://github.com/YenYiHo-Lab/scDECO",
  "BugReports": "https://github.com/YenYiHo-Lab/scDECO/issues",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 09:33:13 UTC",
    "User": "root"
  },
  "Author": "Anderson Bussing [aut, cre], Yen-Yi Ho [aut, ths], Zichen Ma\n[aut], Zhen Yang [aut]",
  "Maintainer": "Anderson Bussing <abussing@email.sc.edu>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-04-02 22:20:02 UTC",
  "RemoteUrl": "https://github.com/cran/scDECO",
  "RemoteRef": "HEAD",
  "RemoteSha": "15e1b6eb289098e03afda7693a1049a8e2f8f679",
  "MD5sum": "a6f6c0751f8862ae025564c13425435f",
  "_user": "cran",
  "_type": "src",
  "_file": "scDECO_0.1.1.tar.gz",
  "_fileid": "e233d7fbc2a8dbde5f121df647fccf6682fae8b94bfb8db293dc17b0a42c089e",
  "_filesize": 116722,
  "_sha256": "e233d7fbc2a8dbde5f121df647fccf6682fae8b94bfb8db293dc17b0a42c089e",
  "_created": "2026-05-28T09:33:13.000Z",
  "_published": "2026-05-28T09:36:18.971Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78263249340,
      "time": 147,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7262539925"
    },
    {
      "job": 78263249392,
      "time": 138,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7262537502"
    },
    {
      "job": 78262632629,
      "time": 217,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7262487859"
    },
    {
      "job": 78263249384,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7262527661"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26566542670",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/scDECO",
  "_commit": {
    "id": "15e1b6eb289098e03afda7693a1049a8e2f8f679",
    "author": "Anderson Bussing <abussing@email.sc.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.1\n",
    "time": 1743632402
  },
  "_maintainer": {
    "name": "Anderson Bussing",
    "email": "abussing@email.sc.edu",
    "login": "abussing",
    "description": "",
    "uuid": 101529275
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "rjags",
      "role": "Imports"
    },
    {
      "package": "msm",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "abussing",
      "count": 2,
      "uuid": 101529275
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 161,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scDECO"
  },
  "_devurl": "https://github.com/yenyiho-lab/scdeco",
  "_searchresults": 0,
  "_topics": [
    "jags",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/scDECO.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/yenyiho-lab/scdeco",
  "_realowner": "yenyiho-lab",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-06-04"
    },
    {
      "version": "0.1.1",
      "date": "2025-04-02"
    }
  ],
  "_exports": [
    "scdeco.cop",
    "scdeco.pg",
    "scdeco.sim.cop",
    "scdeco.sim.pg"
  ],
  "_help": [
    {
      "page": "scdeco.cop",
      "title": "Copula dynamic correlation fitting function",
      "topics": [
        "scdeco.cop"
      ]
    },
    {
      "page": "scdeco.pg",
      "title": "ZENCO Poisson Gamma dynamic correlation fitting function",
      "topics": [
        "scdeco.pg"
      ]
    },
    {
      "page": "scdeco.sim.cop",
      "title": "Simulating from copula model",
      "topics": [
        "scdeco.sim.cop"
      ]
    },
    {
      "page": "scdeco.sim.pg",
      "title": "Simulating from ZENCO Model",
      "topics": [
        "scdeco.sim.pg"
      ]
    }
  ],
  "_readme": "https://github.com/cran/scDECO/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "coda",
    "expm",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "msm",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "rjags",
    "rlang",
    "survival",
    "tibble",
    "utf8",
    "vctrs"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "scDECO-Copula.Rmd",
      "filename": "scDECO-Copula.html",
      "title": "scDECO-Copula",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Quick Start",
        "Model Details",
        "Marginal Parameterizations",
        "Incorporating Zero-inflation",
        "Parameter Estimation",
        "Citations"
      ],
      "created": "2024-06-05 02:45:25",
      "modified": "2024-06-05 02:45:25",
      "commits": 1
    },
    {
      "source": "scDECO-Poisson-Gamma.Rmd",
      "filename": "scDECO-Poisson-Gamma.html",
      "title": "scDECO-Poisson-Gamma",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Quick Start",
        "Model Details",
        "Parameter Estimation",
        "Citations"
      ],
      "created": "2024-06-05 02:45:25",
      "modified": "2024-06-05 02:45:25",
      "commits": 1
    }
  ],
  "_score": 3,
  "_indexed": false,
  "_nocasepkg": "scdeco",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://yenyiho-lab.r-universe.dev/scDECO",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-28T09:35:23.000Z",
      "distro": "noble",
      "commit": "15e1b6eb289098e03afda7693a1049a8e2f8f679",
      "fileid": "99ceb31d368f8ee9738949731b045d951e0069aece5b40b1bb2b1dbfb77f750a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26566542670"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-28T09:35:20.000Z",
      "distro": "noble",
      "commit": "15e1b6eb289098e03afda7693a1049a8e2f8f679",
      "fileid": "8b1f1ebc17c2380433a4a89c6723e74db85e3a8b1319d9e67ecb3767b08d9871",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26566542670"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-05-28T09:35:28.000Z",
      "commit": "15e1b6eb289098e03afda7693a1049a8e2f8f679",
      "fileid": "c3ae69b57417a69103e54e93ac7ebc442795f8d3838c1d3e56ee72c280613980",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26566542670"
    }
  ]
}