Package: rsynthbio 4.2.0
Synthesize Bio
rsynthbio: Synthesize Bio API Wrapper
Access Synthesize Bio models from their API <https://app.synthesize.bio/> using this wrapper that provides a convenient interface to the Synthesize Bio API, allowing users to generate realistic gene expression data based on specified biological conditions. This package enables researchers to easily access AI-generated transcriptomic data for various modalities including bulk RNA-seq, single-cell RNA-seq, microarray data, and more.
Authors:
rsynthbio_4.2.0.tar.gz
rsynthbio_4.2.0.tar.gz(r-4.7-any)rsynthbio_4.2.0.tar.gz(r-4.6-any)
rsynthbio_4.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rsynthbio/json (API)
NEWS
| # Install 'rsynthbio' in R: |
| install.packages('rsynthbio', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/synthesizebio/rsynthbio/issues
Last updated from:58de692e51. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 129 | ||
| source / vignettes | OK | 184 | ||
| linux-release-x86_64 | OK | 123 | ||
| wasm-release | OK | 119 |
Exports:API_BASE_URLclear_synthesize_tokenDEFAULT_POLL_INTERVAL_SECONDSDEFAULT_POLL_TIMEOUT_SECONDSDEFAULT_TIMEOUTget_example_queryhas_synthesize_tokenlist_modelsload_synthesize_token_from_keyringpredict_querySELF_HOSTED_TIMEOUTset_synthesize_token
Dependencies:askpasscurlfilelockgetPasshttrjsonlitekeyringmimeopensslR6rstudioapisysyaml
Available Metadata
Rendered fromavailable-metadata.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2026-06-12
Started: 2026-06-12
Baseline Models
Rendered frombaseline.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2026-02-25
Started: 2026-02-13
Getting Started
Rendered fromgetting-started.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2026-06-12
Started: 2025-06-02
Metadata Prediction
Rendered frommetadata-prediction.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2026-02-13
Started: 2026-02-13
Reference Conditioning
Rendered fromreference-conditioning.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2026-02-25
Started: 2026-02-13
Self-Hosted Models
Rendered fromself-hosted.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2026-06-12
Started: 2026-06-12
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| API Base URL | API_BASE_URL |
| Clear Synthesize Bio API Token | clear_synthesize_token |
| Default Poll Interval | DEFAULT_POLL_INTERVAL_SECONDS |
| Default Poll Timeout | DEFAULT_POLL_TIMEOUT_SECONDS |
| Default Timeout | DEFAULT_TIMEOUT |
| Get Example Query for Model | get_example_query |
| Check if Synthesize Bio API Token is Set | has_synthesize_token |
| List Available Models | list_models |
| Load Synthesize Bio API Token from Keyring | load_synthesize_token_from_keyring |
| Predict Gene Expression | predict_query |
| Self-Hosted Timeout | SELF_HOSTED_TIMEOUT |
| Set Synthesize Bio API Token | set_synthesize_token |
