Typical workflow | Model run with stan_emax function | Prediction of response with new exposure data | Fix parameter values in Emax model | Set covariates
This package is hidden from search results because it is not hosted in the universe of the upstream owner
cran. To fix this you can add URL: https://cran.r-universe.dev/rstanemax to the package DESCRIPTION file. See also theR-universe documentation.Package: rstanemax 0.1.10
Kenta Yoshida
rstanemax: Emax Model Analysis with 'Stan'
Perform sigmoidal Emax model fit using 'Stan' in a formula notation, without writing 'Stan' model code.
Authors:
rstanemax_0.1.10.tar.gz
rstanemax_0.1.10.zip(r-4.7-x86_64)rstanemax_0.1.10.zip(r-4.7-arm64)rstanemax_0.1.10.zip(r-4.6-x86_64)rstanemax_0.1.10.zip(r-4.6-arm64)
rstanemax_0.1.10.tar.gz(r-4.7-arm64)rstanemax_0.1.10.tar.gz(r-4.7-x86_64)rstanemax_0.1.10.tar.gz(r-4.6-arm64)rstanemax_0.1.10.tar.gz(r-4.6-x86_64)
rstanemax_0.1.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rstanemax/json (API)
| # Install 'rstanemax' in R: |
| install.packages('rstanemax', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yoshidk6/rstanemax/issues
Pkgdown/docs site:https://yoshidk6.github.io
Datasets:
- exposure.response.sample - Sample simulated data for exposure-response.
- exposure.response.sample.binary - Sample simulated data for exposure-response for binary endpoint
- exposure.response.sample.with.cov - Sample simulated data for exposure-response with covariates
Last updated from:7657870967. Checks:8 OK, 2 ERROR. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 269 | ||
| linux-devel-x86_64 | OK | 287 | ||
| source / vignettes | OK | 423 | ||
| linux-release-arm64 | OK | 246 | ||
| linux-release-x86_64 | OK | 332 | ||
| windows-devel-arm64 | ERROR | 387 | ||
| windows-devel-x86_64 | OK | 404 | ||
| windows-release-arm64 | ERROR | 400 | ||
| windows-release-x86_64 | OK | 331 | ||
| wasm-release | OK | 205 |
Exports:%>%as_drawsas_draws_arrayas_draws_dfas_draws_listas_draws_matrixas_draws_rvarsextract_obs_mod_frameextract_paramextract_stanfitlog_likposterior_epredposterior_linpredposterior_predictposterior_predict_quantilestan_emaxstan_emax_binary
Dependencies:abindbackportsBHcallrcheckmateclicpp11descdistributionaldplyrfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglifecycleloomagrittrmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The 'rstanemax' package. | rstanemax-package rstanemax |
| Convert stanemax object to a posterior draws object | as_draws as_draws.stanemax as_draws.stanemaxbin as_draws_array as_draws_array.stanemax as_draws_array.stanemaxbin as_draws_df as_draws_df.stanemax as_draws_df.stanemaxbin as_draws_list as_draws_list.stanemax as_draws_list.stanemaxbin as_draws_matrix as_draws_matrix.stanemax as_draws_matrix.stanemaxbin as_draws_rvars as_draws_rvars.stanemax as_draws_rvars.stanemaxbin |
| Sample simulated data for exposure-response. | exposure.response.sample |
| Sample simulated data for exposure-response for binary endpoint | exposure.response.sample.binary |
| Sample simulated data for exposure-response with covariates | exposure.response.sample.with.cov |
| Extract posterior draws of key parameters | extract_param |
| Calculate log-likelihoods from posterior samples. Data can be either original data used for model fit or new data. | log_lik log_lik.stanemax log_lik.stanemaxbin |
| Outcome prediction from posterior distribution of parameters | posterior_epred posterior_epred.stanemax posterior_epred.stanemaxbin posterior_linpred posterior_linpred.stanemax posterior_linpred.stanemaxbin posterior_predict posterior_predict.stanemax posterior_predict.stanemaxbin posterior_predict_quantile |
| Bayesian Emax model fit with Stan | stan_emax |
| Bayesian Emax model fit with Stan for binary endpoint | stan_emax_binary |
| Methods for stanemax objects | extract_obs_mod_frame extract_stanfit plot.stanemax plot.stanemaxbin print.stanemax print.stanemaxbin stanemax-methods |