Package: robustlmm 3.3-1
Manuel Koller
robustlmm: Robust Linear Mixed Effects Models
Implements the Robust Scoring Equations estimator to fit linear mixed effects models robustly. Robustness is achieved by modification of the scoring equations combined with the Design Adaptive Scale approach.
Authors:
robustlmm_3.3-1.tar.gz
robustlmm_3.3-1.tar.gz(r-4.5-noble)robustlmm_3.3-1.tar.gz(r-4.4-noble)
robustlmm_3.3-1.tgz(r-4.4-emscripten)
robustlmm.pdf |robustlmm.html✨
robustlmm/json (API)
| # Install 'robustlmm' in R: |
| install.packages('robustlmm', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kollerma/robustlmm/issues
Last updated 11 months agofrom:e6b25b41a4. Checks:OK: 1 WARNING: 1. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 10 2024 |
| R-4.5-linux-x86_64 | WARNING | Oct 10 2024 |
Exports:asymptoticEfficiencyasymptoticVariancebindDatasetschgDefaultscomparecPsicreateDatasetsFromListcreateRhoFunctionextractPredefinedTuningParameterextractTuningParameterfindTuningParameterfitDatasets_heavyLmefitDatasets_lmerfitDatasets_lmer_bobyqafitDatasets_lmer_Nelder_MeadfitDatasets_lqmmfitDatasets_rlmefitDatasets_rlmerfitDatasets_rlmer_DAStaufitDatasets_rlmer_DAStau_k_0_5fitDatasets_rlmer_DAStau_k_0_5_noAdjfitDatasets_rlmer_DAStau_k_2fitDatasets_rlmer_DAStau_k_2_noAdjfitDatasets_rlmer_DAStau_k_5fitDatasets_rlmer_DAStau_k_5_noAdjfitDatasets_rlmer_DAStau_lmerNoFitfitDatasets_rlmer_DAStau_noAdjfitDatasets_rlmer_DASvarfitDatasets_varComprobfitDatasets_varComprob_compositeSfitDatasets_varComprob_compositeS_2SGSfitDatasets_varComprob_compositeS_OGKfitDatasets_varComprob_compositeTaufitDatasets_varComprob_compositeTau_2SGSfitDatasets_varComprob_compositeTau_OGKfitDatasets_varComprob_SfitDatasets_varComprob_S_2SGSfitDatasets_varComprob_S_OGKgenerateAnovaDatasetsgenerateMixedEffectDatasetsgenerateSensitivityCurveDatasetsgetInfogetMEhuberPsiRcpplapplyDatasetslmerNoFitloadAndMergePartialResultsmergeProcessedFitspartialMoment_standardNormalplotplot.rlmerModprepareMixedEffectDatasetprocessDatasetsInParallelprocessFileprocessFitpsi2propIIrlmersaveDatasetsshortenLabelsKS2022showsmoothPsisplitDatasetsthetaviewCopyOfSimulationStudy
Dependencies:bootDEoptimRfastGHQuadlatticelme4MASSMatrixminqanlmenloptrRcppRcppEigenrlangrobustbasextable
Replication Code For Simulation Studies
Rendered fromsimulationStudies.Rnwusingutils::Sweaveon Oct 10 2024.Last update: 2023-03-25
Started: 2022-08-07
robustlmm: An R Package for Robust Estimation of Linear Mixed-Effects Models
Rendered fromrlmer.Rnwusingutils::Sweaveon Oct 10 2024.Last update: 2022-08-07
Started: 2013-03-08
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Robust linear mixed effects models | robustlmm-package robustlmm |
| Compute Asymptotic Efficiencies | asymptoticEfficiency asymptoticVariance findTuningParameter |
| Bind Generated Datasets | bindDatasets |
| Change default arguments | chgDefaults chgDefaults,psi_func_rcpp-method |
| Create comparison charts for multiple fits | compare getInfo getInfo.lmerMod getInfo.rlmerMod print.xtable.comparison.table xtable.comparison.table |
| Create Dataset List From List of Data Objects | createDatasetsFromList |
| Create Rho-Functions With Custom Tuning Parameter | createRhoFunction |
| Extract Tuning Parameters Used In Fitting | extractPredefinedTuningParameter extractTuningParameter |
| Fitting Functions | fitDatasets fitDatasets_heavyLme fitDatasets_lmer fitDatasets_lmer_bobyqa fitDatasets_lmer_Nelder_Mead fitDatasets_lqmm fitDatasets_rlme fitDatasets_rlmer fitDatasets_rlmer_DAStau fitDatasets_rlmer_DAStau_k_0_5 fitDatasets_rlmer_DAStau_k_0_5_noAdj fitDatasets_rlmer_DAStau_k_2 fitDatasets_rlmer_DAStau_k_2_noAdj fitDatasets_rlmer_DAStau_k_5 fitDatasets_rlmer_DAStau_k_5_noAdj fitDatasets_rlmer_DAStau_lmerNoFit fitDatasets_rlmer_DAStau_noAdj fitDatasets_rlmer_DASvar fitDatasets_varComprob fitDatasets_varComprob_compositeS fitDatasets_varComprob_compositeS_2SGS fitDatasets_varComprob_compositeS_OGK fitDatasets_varComprob_compositeTau fitDatasets_varComprob_compositeTau_2SGS fitDatasets_varComprob_compositeTau_OGK fitDatasets_varComprob_S fitDatasets_varComprob_S_2SGS fitDatasets_varComprob_S_OGK |
| Generate ANOVA type datasets | generateAnovaDatasets |
| Generate Mixed Effects Datasets | generateMixedEffectDatasets |
| Generate Datasets To Create Sensitivity Curves | generateSensitivityCurveDatasets |
| Extract or Get Generalize Components from a Fitted Mixed Effects Model | getME getME.rlmerMod theta |
| Lapply for generated datasets | lapplyDatasets |
| Load And Merge Partial Results | loadAndMergePartialResults |
| Merge Processed Fits | mergeProcessedFits |
| Other methods | show show,Rcpp_HuberPsi-method show,Rcpp_PsiFunction-method show,Rcpp_PsiFunctionToPropIIPsiFunctionWrapper-method show,Rcpp_SmoothPsi-method |
| Compute Partial Moments | partialMoment_standardNormal |
| Plot an Object of the "Psi Function" Class | plot,Rcpp_HuberPsi-method plot,Rcpp_PsiFunction-method plot,Rcpp_PsiFunctionToPropIIPsiFunctionWrapper-method plot,Rcpp_SmoothPsi-method plot-methods |
| Plot Method for "rlmerMod" objects. | plot.rlmerMod print.rlmerMod_plots |
| Prepare Dataset for Parametric Bootstrap | prepareMixedEffectDataset |
| Process Datasets in Parallel | processDatasetsInParallel |
| Process File of Stored Datasets | processFile |
| Process Fitted Objects | processFit processFit.heavyLme processFit.lmerMod processFit.lqmm processFit.rlme processFit.rlmerMod processFit.varComprob |
| Classical, Huber and smoothed Huber psi- or rho-functions | cPsi huberPsiRcpp psi-functions PsiFunction SmoothPsi smoothPsi |
| Convert to Proposal 2 weight function | psi2propII psi2propII,psi_func_rcpp-method psi2propII,Rcpp_SmoothPsi |
| Get residuals | residuals.rlmerMod |
| Robust Scoring Equations Estimator for Linear Mixed Models | lmerNoFit rlmer |
| rlmerMod Class | coef.rlmerMod deviance.rlmerMod extractAIC.rlmerMod family.rlmerMod fitted.rlmerMod fixef.rlmerMod formula.rlmerMod isGLMM.rlmerMod isLMM.rlmerMod isNLMM.rlmerMod isREML.rlmerMod logLik.rlmerMod model.frame.rlmerMod model.matrix.rlmerMod nobs.rlmerMod predict.rlmerMod print.rlmerMod print.summary.rlmer print.VarCorr.rlmerMod ranef.rlmerMod resid.rlmerMod rlmerMod-class show,rlmerMod-method show.rlmerMod show.summary.rlmerMod sigma.rlmerMod summary.rlmerMod summary.summary.rlmerMod terms.rlmerMod update.rlmerMod VarCorr.rlmerMod VarCorr.summary.rlmerMod vcov.rlmerMod vcov.summary.rlmerMod weights.rlmerMod |
| Save datasets | saveDatasets |
| Shorten Labels | shortenLabelsKS2022 |
| Split Datasets Into Chunks | splitDatasets |
| Access Simulation Study Code | viewCopyOfSimulationStudy |
