Package: refitME 1.2.2

Jakub Stoklosa

refitME: Measurement Error Modelling using MCEM

Fits measurement error models using Monte Carlo Expectation Maximization (MCEM). For specific details on the methodology, see: Greg C. G. Wei & Martin A. Tanner (1990) A Monte Carlo Implementation of the EM Algorithm and the Poor Man's Data Augmentation Algorithms, Journal of the American Statistical Association, 85:411, 699-704 <doi:10.1080/01621459.1990.10474930> For more examples on measurement error modelling using MCEM, see the 'RMarkdown' vignette: "'refitME' R-package tutorial".

Authors:Jakub Stoklosa [aut, cre], Wenhan Hwang [aut, ctb], David Warton [aut, ctb]

refitME_1.2.2.tar.gz
refitME_1.2.2.tar.gz(r-4.5-noble)refitME_1.2.2.tar.gz(r-4.4-noble)
refitME_1.2.2.tgz(r-4.4-emscripten)refitME_1.2.2.tgz(r-4.3-emscripten)
refitME.pdf |refitME.html✨
refitME/json (API)

# Install 'refitME' in R:

install.packages('refitME', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

Corymbiaeximiadata - The Corymbia eximia presence-only data set
Framinghamdata - The Framingham heart study data set
Priniadata - The yellow-bellied Prinia _Prinia flaviventris_ capture-recapture data

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 9 scripts 167 downloads 8 exports 83 dependencies

Last updated 3 years agofrom:0e3631b55c. Checks:OK: 1 NOTE: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 22 2024
R-4.5-linux	NOTE	Nov 22 2024

Exports:anova_MCEMfit_glm logLik_MCEMfit_lm MCEMfit_CR MCEMfit_gam MCEMfit_gen MCEMfit_glm refitME wt.var

Dependencies:caret class cli clock cluster codetools colorspace cpp11 data.table diagram digest dplyr e1071 expm fansi farver foreach future future.apply generics ggplot2 globals glue gower gtable hardhat ipred isoband iterators KernSmooth labeling lattice lava lifecycle listenv lubridate magrittr MASS Matrix mgcv ModelMetrics munsell mvtnorm nlme nnet numDeriv parallelly pillar pkgconfig plyr pROC prodlim progressr proxy purrr R6 RColorBrewer Rcpp recipes reshape2 rlang rpart sandwich scales SemiPar shape SQUAREM stringi stringr survival tibble tidyr tidyselect timechange timeDate tzdb utf8 vctrs VGAM VGAMdata viridisLite withr zoo

Help page	Topics
An ANOVA function for fitted 'MCEMfit_glm' objects	anova_MCEMfit_glm
An ANOVA function for fitted 'refitME' objects	anova.refitME
The Corymbia eximia presence-only data set	Corymbiaeximiadata
The Framingham heart study data set	Framinghamdata
Extract log-Likelihoods for 'MCEMfit_lm' model objects	logLik_MCEMfit_lm
Extract log-Likelihoods for 'refitME' model objects	logLik.refitME
Function for fitting 'VGAM' capture-recapture (CR) model using the MCEM algorithm	MCEMfit_CR
Function for wrapping the MCEM algorithm on 'gam' objects	MCEMfit_gam
Function for fitting any likelihood-based model using the MCEM algorithm	MCEMfit_gen
Function for wrapping the MCEM algorithm on 'lm' or 'glm' objects	MCEMfit_glm
The yellow-bellied Prinia _Prinia flaviventris_ capture-recapture data	Priniadata
A wrapper function for correcting measurement error in predictor variables via the MCEM algorithm	refitME
Function that replaces NA with zero for a matrix	sqrt.na
Function that calculates a weighted variance	wt.var

Package: refitME 1.2.2

refitME: Measurement Error Modelling using MCEM

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