{
  "_id": "6a1f304cb401979e734277c9",
  "Package": "refitME",
  "Title": "Measurement Error Modelling using MCEM",
  "Version": "1.3.1",
  "Authors@R": "c(person(given = \"Jakub\",\nfamily = \"Stoklosa\",\nrole = c(\"aut\", \"cre\"),\nemail = \"j.stoklosa@unsw.edu.au\",\ncomment = c(ORCID = \"0000-0002-6523-4524\")),\nperson(given = \"Wenhan\",\nfamily = \"Hwang\",\nrole = c(\"aut\", \"ctb\")),\nperson(given = \"David\",\nfamily = \"Warton\",\nrole = c(\"aut\", \"ctb\")))",
  "Description": "Fits measurement error models using Monte Carlo\nExpectation Maximization (MCEM). For specific details on the\nmethodology, see: Greg C. G. Wei & Martin A. Tanner (1990) A\nMonte Carlo Implementation of the EM Algorithm and the Poor\nMan's Data Augmentation Algorithms, Journal of the American\nStatistical Association, 85:411, 699-704\n<doi:10.1080/01621459.1990.10474930> For more examples on\nmeasurement error modelling using MCEM, see the 'RMarkdown'\nvignette: \"'refitME' R-package tutorial\".",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 08:46:24 UTC",
    "User": "root"
  },
  "Author": "Jakub Stoklosa [aut, cre]\n(<https://orcid.org/0000-0002-6523-4524>), Wenhan Hwang [aut,\nctb], David Warton [aut, ctb]",
  "Maintainer": "Jakub Stoklosa <j.stoklosa@unsw.edu.au>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-04-13 05:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/refitME",
  "RemoteRef": "HEAD",
  "RemoteSha": "247d52b0ca50e69820e881efc2de2e6bad80427c",
  "MD5sum": "15ad94aba6e0c1ddb63d4a280897b31c",
  "_user": "cran",
  "_type": "src",
  "_file": "refitME_1.3.1.tar.gz",
  "_fileid": "6de6704faa60f2255b38cb33ea39d61afb2c1adb2a37bf8db926aed78eb83d6c",
  "_filesize": 1681749,
  "_sha256": "6de6704faa60f2255b38cb33ea39d61afb2c1adb2a37bf8db926aed78eb83d6c",
  "_created": "2026-05-15T08:46:24.000Z",
  "_published": "2026-06-02T19:34:36.485Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79155655073,
      "time": 159,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7013394799"
    },
    {
      "job": 79155654542,
      "time": 131,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7013387392"
    },
    {
      "job": 79155654267,
      "time": 182,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013352017"
    },
    {
      "job": 79155653874,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367888647"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/25908757061",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/refitME",
  "_commit": {
    "id": "247d52b0ca50e69820e881efc2de2e6bad80427c",
    "author": "Jakub Stoklosa <j.stoklosa@unsw.edu.au>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3.1\n",
    "time": 1744520402
  },
  "_maintainer": {
    "name": "Jakub Stoklosa",
    "email": "j.stoklosa@unsw.edu.au",
    "orcid": "0000-0002-6523-4524"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "mgcv",
      "role": "Imports"
    },
    {
      "package": "VGAM",
      "role": "Imports"
    },
    {
      "package": "VGAMdata",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "expm",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "sandwich",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 176,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/refitME"
  },
  "_searchresults": 15,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/refitME.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.2.0",
      "date": "2021-04-26"
    },
    {
      "version": "1.2.1",
      "date": "2021-06-28"
    },
    {
      "version": "1.2.2",
      "date": "2021-08-03"
    },
    {
      "version": "1.3.1",
      "date": "2025-04-13"
    }
  ],
  "_exports": [
    "anova_MCEMfit_glm",
    "logLik_MCEMfit_lm",
    "MCEMfit_CR",
    "MCEMfit_gam",
    "MCEMfit_gen",
    "MCEMfit_glm",
    "refitME",
    "wt.var"
  ],
  "_datasets": [
    {
      "name": "Corymbiaeximiadata",
      "title": "The Corymbia eximia presence-only data set",
      "object": "Corymbiaeximiadata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "X",
        "Y",
        "FC",
        "MNT",
        "MXT",
        "Rain",
        "D.Main",
        "D.Urb",
        "Y.obs"
      ],
      "rows": 86316,
      "table": true,
      "tojson": true
    },
    {
      "name": "Framinghamdata",
      "title": "The Framingham heart study data set",
      "object": "Framinghamdata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Y",
        "z1",
        "z2",
        "z3",
        "w1"
      ],
      "rows": 1615,
      "table": true,
      "tojson": true
    },
    {
      "name": "Milanmortdata",
      "title": "The Milan mortality data set",
      "object": "Milanmortdata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "day.num",
        "day.of.week",
        "holiday",
        "mean.temp",
        "rel.humid",
        "tot.mort",
        "resp.mort",
        "SO2",
        "TSP"
      ],
      "rows": 3652,
      "table": true,
      "tojson": true
    },
    {
      "name": "Priniadata",
      "title": "The yellow-bellied Prinia _Prinia flaviventris_ capture-recapture data",
      "object": "Priniadata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "w1",
        "cap",
        "noncap"
      ],
      "rows": 164,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "anova_MCEMfit_glm",
      "title": "An ANOVA function for fitted 'MCEMfit_glm' objects",
      "topics": [
        "anova_MCEMfit_glm"
      ]
    },
    {
      "page": "anova.refitME",
      "title": "An ANOVA function for fitted 'refitME' objects",
      "topics": [
        "anova.refitME"
      ]
    },
    {
      "page": "Corymbiaeximiadata",
      "title": "The Corymbia eximia presence-only data set",
      "topics": [
        "Corymbiaeximiadata"
      ]
    },
    {
      "page": "Framinghamdata",
      "title": "The Framingham heart study data set",
      "topics": [
        "Framinghamdata"
      ]
    },
    {
      "page": "logLik_MCEMfit_lm",
      "title": "Extract log-Likelihoods for 'MCEMfit_lm' model objects",
      "topics": [
        "logLik_MCEMfit_lm"
      ]
    },
    {
      "page": "logLik.refitME",
      "title": "Extract log-Likelihoods for 'refitME' model objects",
      "topics": [
        "logLik.refitME"
      ]
    },
    {
      "page": "MCEMfit_CR",
      "title": "Function for fitting 'VGAM' capture-recapture (CR) model using the MCEM algorithm",
      "topics": [
        "MCEMfit_CR"
      ]
    },
    {
      "page": "MCEMfit_gam",
      "title": "Function for wrapping the MCEM algorithm on 'gam' objects",
      "topics": [
        "MCEMfit_gam"
      ]
    },
    {
      "page": "MCEMfit_gen",
      "title": "Function for fitting any likelihood-based model using the MCEM algorithm",
      "topics": [
        "MCEMfit_gen"
      ]
    },
    {
      "page": "MCEMfit_glm",
      "title": "Function for wrapping the MCEM algorithm on 'lm' or 'glm' objects",
      "topics": [
        "MCEMfit_glm"
      ]
    },
    {
      "page": "Milanmortdata",
      "title": "The Milan mortality data set",
      "topics": [
        "Milanmortdata"
      ]
    },
    {
      "page": "Priniadata",
      "title": "The yellow-bellied Prinia _Prinia flaviventris_ capture-recapture data",
      "topics": [
        "Priniadata"
      ]
    },
    {
      "page": "refitME",
      "title": "A wrapper function for correcting measurement error in predictor variables via the MCEM algorithm",
      "topics": [
        "refitME"
      ]
    },
    {
      "page": "sqrt.na",
      "title": "Function that replaces NA with zero for a matrix",
      "topics": [
        "sqrt.na"
      ]
    },
    {
      "page": "wt.var",
      "title": "Function that calculates a weighted variance",
      "topics": [
        "wt.var"
      ]
    }
  ],
  "_readme": "https://github.com/cran/refitME/raw/HEAD/README.md",
  "_rundeps": [
    "caret",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "data.table",
    "diagram",
    "digest",
    "dplyr",
    "e1071",
    "expm",
    "farver",
    "foreach",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "globals",
    "glue",
    "gower",
    "gtable",
    "hardhat",
    "ipred",
    "isoband",
    "iterators",
    "KernSmooth",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "mgcv",
    "ModelMetrics",
    "mvtnorm",
    "nlme",
    "nnet",
    "numDeriv",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "pROC",
    "prodlim",
    "progressr",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "recipes",
    "reshape2",
    "rlang",
    "rpart",
    "S7",
    "sandwich",
    "scales",
    "shape",
    "sparsevctrs",
    "SQUAREM",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tzdb",
    "utf8",
    "vctrs",
    "VGAM",
    "VGAMdata",
    "viridisLite",
    "withr",
    "zoo"
  ],
  "_score": 1.8750612633917,
  "_indexed": true,
  "_nocasepkg": "refitme",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-05-15T08:48:40.000Z",
      "distro": "noble",
      "commit": "247d52b0ca50e69820e881efc2de2e6bad80427c",
      "fileid": "0af010189a5b2e98eb69c38ff154a54d2172a3750baf776dc12078d1251c1522",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25908757061"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-05-15T08:48:17.000Z",
      "distro": "noble",
      "commit": "247d52b0ca50e69820e881efc2de2e6bad80427c",
      "fileid": "4ab8967fa039ada2ab5ac8d21581d4542098d1ca8ab3668066e793b87ab045fa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25908757061"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.1",
      "date": "2026-06-02T19:34:12.000Z",
      "commit": "247d52b0ca50e69820e881efc2de2e6bad80427c",
      "fileid": "6e67df11dc9128e7d586843d6c08ca335fde0c4a91d9534f929fa58b0d21ff30",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25908757061"
    }
  ]
}