Package: protr 1.7-3
Nan Xiao
protr: Generating Various Numerical Representation Schemes for Protein Sequences
Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html> for more information.
Authors:
protr_1.7-3.tar.gz
protr_1.7-3.tar.gz(r-4.5-noble)protr_1.7-3.tar.gz(r-4.4-noble)
protr_1.7-3.tgz(r-4.4-emscripten)protr_1.7-3.tgz(r-4.3-emscripten)
protr.pdf |protr.html✨
protr/json (API)
NEWS
| # Install 'protr' in R: |
| install.packages('protr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nanxstats/protr/issues
- AA2DACOR - 2D Autocorrelations Descriptors for 20 Amino Acids calculated by Dragon
- AA3DMoRSE - 3D-MoRSE Descriptors for 20 Amino Acids calculated by Dragon
- AAACF - Atom-Centred Fragments Descriptors for 20 Amino Acids calculated by Dragon
- AABLOSUM100 - BLOSUM100 Matrix for 20 Amino Acids
- AABLOSUM45 - BLOSUM45 Matrix for 20 Amino Acids
- AABLOSUM50 - BLOSUM50 Matrix for 20 Amino Acids
- AABLOSUM62 - BLOSUM62 Matrix for 20 Amino Acids
- AABLOSUM80 - BLOSUM80 Matrix for 20 Amino Acids
- AABurden - Burden Eigenvalues Descriptors for 20 Amino Acids calculated by Dragon
- AACPSA - CPSA Descriptors for 20 Amino Acids calculated by Discovery Studio
- AAConn - Connectivity Indices Descriptors for 20 Amino Acids calculated by Dragon
- AAConst - Constitutional Descriptors for 20 Amino Acids calculated by Dragon
- AADescAll - All 2D Descriptors for 20 Amino Acids calculated by Dragon
- AAEdgeAdj - Edge Adjacency Indices Descriptors for 20 Amino Acids calculated by Dragon
- AAEigIdx - Eigenvalue-Based Indices Descriptors for 20 Amino Acids calculated by Dragon
- AAFGC - Functional Group Counts Descriptors for 20 Amino Acids calculated by Dragon
- AAGETAWAY - GETAWAY Descriptors for 20 Amino Acids calculated by Dragon
- AAGeom - Geometrical Descriptors for 20 Amino Acids calculated by Dragon
- AAInfo - Information Indices Descriptors for 20 Amino Acids calculated by Dragon
- AAMOE2D - 2D Descriptors for 20 Amino Acids calculated by MOE 2011.10
- AAMOE3D - 3D Descriptors for 20 Amino Acids calculated by MOE 2011.10
- AAMetaInfo - Meta Information for the 20 Amino Acids
- AAMolProp - Molecular Properties Descriptors for 20 Amino Acids calculated by Dragon
- AAPAM120 - PAM120 Matrix for 20 Amino Acids
- AAPAM250 - PAM250 Matrix for 20 Amino Acids
- AAPAM30 - PAM30 Matrix for 20 Amino Acids
- AAPAM40 - PAM40 Matrix for 20 Amino Acids
- AAPAM70 - PAM70 Matrix for 20 Amino Acids
- AARDF - RDF Descriptors for 20 Amino Acids calculated by Dragon
- AARandic - Randic Molecular Profiles Descriptors for 20 Amino Acids calculated by Dragon
- AATopo - Topological Descriptors for 20 Amino Acids calculated by Dragon
- AATopoChg - Topological Charge Indices Descriptors for 20 Amino Acids calculated by Dragon
- AAWHIM - WHIM Descriptors for 20 Amino Acids calculated by Dragon
- AAWalk - Walk and Path Counts Descriptors for 20 Amino Acids calculated by Dragon
- AAindex - AAindex Data of 544 Physicochemical and Biological Properties for 20 Amino Acids
Last updated 8 days agofrom:035c0fe359. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 31 2024 |
| R-4.5-linux | OK | Aug 31 2024 |
Exports:acccrossSetSimcrossSetSimDiskextractAACextractAPAACextractBLOSUMextractCTDCextractCTDCClassextractCTDDextractCTDDClassextractCTDTextractCTDTClassextractCTriadextractCTriadClassextractDCextractDescScalesextractFAScalesextractGearyextractMDSScalesextractMoranextractMoreauBrotoextractPAACextractProtFPextractProtFPGapextractPSSMextractPSSMAccextractPSSMFeatureextractQSOextractScalesextractScalesGapextractSOCNextractTCgetUniProtparGOSimparSeqSimparSeqSimDiskprotcheckprotsegreadFASTAreadPDBremoveGapstwoGOSimtwoSeqSim
Dependencies:
