Package: progme 0.1.0
progme: Extended Progression Models for Repeated Measures
Extended progression models for repeated measures in progressive disease clinical trials. Provides nonlinear mixed-effects progression models (linear, plateau, Emax, exponential decay), delayed treatment onset estimation by profile likelihood, joint longitudinal-survival models for informative dropout, competing-risks extensions, biomarker-informed adaptive dosing rules, and simulation-based power and sample-size calculation. The progression-model view of treatment effects, in which effects are characterised on the underlying disease trajectory rather than as additive shifts on the outcome scale, follows Raket (2022) <doi:10.1002/sim.9581>. The nonlinear mixed-effects machinery is built on the 'nlme' implementation described by Pinheiro and Bates (2000, ISBN 978-0-387-98957-0), and the joint modelling of longitudinal and time-to-event data follows Rizopoulos (2012, ISBN 978-1-4398-7286-4).
Authors:
progme_0.1.0.tar.gz
progme_0.1.0.zip(r-4.7-any)progme_0.1.0.zip(r-4.6-any)
progme_0.1.0.tar.gz(r-4.7-any)progme_0.1.0.tar.gz(r-4.6-any)
progme_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
progme/json (API)
| # Install 'progme' in R: |
| install.packages('progme', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mukulbijalwan/progme/issues
- adni_simulated - Simulated ADNI-style Alzheimer's trial data
- parkinsons_simulated - Simulated Parkinson's trial data with informative dropout
Last updated from:75ba93ebdc. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 240 | ||
| source / vignettes | OK | 336 | ||
| linux-release | OK | 155 | ||
| windows-devel | OK | 135 | ||
| windows-release | OK | 136 | ||
| wasm-release | OK | 315 |
Exports:biomarker_dosing_rulecheck_convergencedefault_priorsdelayed_effectemax_biomarkerfind_sample_sizefit_pmrmgoodness_of_fitinitialize_subjectsparametric_bootstrappkpd_concentrationplot.pmrm_delayedpmrm_adaptive_trialpmrm_competingpmrm_delayedpmrm_jointpmrm_nlmepopulation_trajectorypower_pmrmpredict.pmrm_nlmeprint.pmrm_delayedscenario_basescenario_optimisticscenario_pessimisticsimulate_biomarkersimulate_joint_trialsimulate_progression_trialsubject_summariessummary.pmrm_delayedto_event_datavpc
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglatticelifecycleMatrixnlmeR6RColorBrewerrlangS7scalessurvivalvctrsviridisLitewithr
Last update: 2026-10-22
Started: 2026-10-22
Last update: 2026-10-22
Started: 2026-10-22
Last update: 2026-10-22
Started: 2026-10-22
