Package: predhy.GUI 2.0.1

Yuxiang Zhang
predhy.GUI: Genomic Prediction of Hybrid Performance with Graphical User Interface
Performs genomic prediction of hybrid performance using eight GS methods including GBLUP, BayesB, RKHS, PLS, LASSO, Elastic net, XGBoost and LightGBM. GBLUP: genomic best liner unbiased prediction, RKHS: reproducing kernel Hilbert space, PLS: partial least squares regression, LASSO: least absolute shrinkage and selection operator, XGBoost: extreme gradient boosting, LightGBM: light gradient boosting machine. It also provides fast cross-validation and mating design scheme for training population (Xu S et al (2016) <doi:10.1111/tpj.13242>; Xu S (2017) <doi:10.1534/g3.116.038059>).
Authors:
predhy.GUI_2.0.1.tar.gz
predhy.GUI_2.0.1.tar.gz(r-4.5-noble)predhy.GUI_2.0.1.tar.gz(r-4.4-noble)
predhy.GUI_2.0.1.tgz(r-4.4-emscripten)predhy.GUI_2.0.1.tgz(r-4.3-emscripten)
predhy.GUI.pdf |predhy.GUI.html✨
predhy.GUI/json (API)
# Install 'predhy.GUI' in R: |
install.packages('predhy.GUI', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- hybrid_phe - Phenotypic data of hybrids
- input_geno - Genotype in Hapmap Format
- input_geno1 - Genotype in Numeric Format
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 months agofrom:79b22e1087. Checks:2 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Jan 14 2025 |
R-4.5-linux | OK | Jan 14 2025 |
Exports:predhy.GUI
Dependencies:base64encBGLRbslibcachemclicodetoolscommonmarkcrayoncrosstalkdata.tabledigestdoParallelDTevaluatefastmapfontawesomeforeachfsglmnetgluehighrhtmltoolshtmlwidgetshttpuviteratorsjquerylibjsonliteknitrlaterlatticelazyevallifecyclelightgbmmagrittrMASSMatrixmemoisemimeplspredhypromisesR6rappdirsRcppRcppEigenrlangrmarkdownsassshapeshinysourcetoolssurvivaltinytextruncnormwithrxfunxgboostxtableyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Phenotypic data of hybrids | hybrid_phe |
Genotype in Hapmap Format | input_geno |
Genotype in Numeric Format | input_geno1 |
Graphical User Interface for R package predhy | predhy.GUI |