Package: popbio 2.8
Chris Stubben
popbio: Construction and Analysis of Matrix Population Models
Construct and analyze projection matrix models from a demography study of marked individuals classified by age or stage. The package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak (2002).
Authors:
popbio_2.8.tar.gz
popbio_2.8.tar.gz(r-4.5-noble)popbio_2.8.tar.gz(r-4.4-noble)
popbio_2.8.tgz(r-4.4-emscripten)popbio_2.8.tgz(r-4.3-emscripten)
popbio.pdf |popbio.html✨
popbio/json (API)
| # Install 'popbio' in R: |
| install.packages('popbio', repos = 'https://cloud.r-project.org') |
- aq.census - Annual census data for Aquilegia chrysantha
- aq.trans - Annual transition data for Aquilegia chrysantha
- calathea - Projection matrices for a tropical understory herb
- grizzly - Population sizes of grizzly bears in Yellowstone from 1959-1997
- hudcorrs - Correlation matrices for Hudsonia vital rates
- hudsonia - Projection matrices for mountain golden heather
- hudvrs - Best Kendall estimates of Hudsonia vital rate means and variances
- monkeyflower - Projection matrices for monkeyflower
- nematode - Population densities for the sugarbeet cyst nematode
- teasel - Projection matrix for teasel
- test.census - Census data for hypothetical plant
- tortoise - Projection matrices for desert tortoise
- whale - Projection matrix for killer whale
- woodpecker - Survirvorship data for adult and juvenile Acorn Woodpeckers
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 12 months agofrom:9befad8eea. Checks:3 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 23 2025 |
| R-4.5-linux | OK | Mar 23 2025 |
| R-4.4-linux | OK | Mar 23 2025 |
Exports:aq.matrixbetavalboot.transitionscountCDFxtdamping.ratioeigen.analysiselasticityextCDFfundamental.matrixgeneration.timehead2hudmxdefimage2Kendalllambdalnormslogi.hist.plotLTREmatplot2matrix2multiresultmnet.reproductive.ratepfister.plotpop.projectionprojection.matrixQPmatreproductive.valueresamplesecdersensitivitysplitAstable.stagestage.vector.plotstoch.growth.ratestoch.projectionstoch.quasi.extstoch.sensstretchbetavalvar2varEstvitalsensvitalsim
Dependencies:
Citation
Stubben CJ, Milligan BG (2007). “Estimating and Analyzing Demographic Models Using the popbio Package in R.” Journal of Statistical Software, 22(11). doi:10.18637/jss.v022.i11.
Corresponding BibTeX entry:
@Article{,
author = {Chris J. Stubben and Brook G. Milligan},
title = {Estimating and Analyzing Demographic Models Using the
popbio Package in R},
journal = {Journal of Statistical Software},
volume = {22},
number = {11},
year = {2007},
doi = {10.18637/jss.v022.i11},
}
Readme and manuals
popbio
popbio is an R package for modeling population growth rates using age- or stage-classified matrix models. The package consists mainly of methods described in Hal Caswell's Matrix Population Models (2001) and Morris and Doak's Quantitative Conservation Biology (2002). The R code was first submitted to CRAN in 2007.
See the wiki for more details.