{
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  "Version": "2.8",
  "Author": "Chris Stubben, Brook Milligan, Patrick Nantel",
  "Maintainer": "Chris Stubben <chris.stubben@hci.utah.edu>",
  "Title": "Construction and Analysis of Matrix Population Models",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Description": "Construct and analyze projection matrix models from a\ndemography study of marked individuals classified by age or\nstage. The package covers methods described in Matrix\nPopulation Models by Caswell (2001) and Quantitative\nConservation Biology by Morris and Doak (2002).",
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    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.8\n",
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  "_dependencies": [
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    "countCDFxt",
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    "extCDF",
    "fundamental.matrix",
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    "head2",
    "hudmxdef",
    "image2",
    "Kendall",
    "lambda",
    "lnorms",
    "logi.hist.plot",
    "LTRE",
    "matplot2",
    "matrix2",
    "multiresultm",
    "net.reproductive.rate",
    "pfister.plot",
    "pop.projection",
    "projection.matrix",
    "QPmat",
    "reproductive.value",
    "resample",
    "secder",
    "sensitivity",
    "splitA",
    "stable.stage",
    "stage.vector.plot",
    "stoch.growth.rate",
    "stoch.projection",
    "stoch.quasi.ext",
    "stoch.sens",
    "stretchbetaval",
    "var2",
    "varEst",
    "vitalsens",
    "vitalsim"
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    },
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      "name": "aq.trans",
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      "object": "aq.trans",
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      "table": true,
      "tojson": true
    },
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      "name": "calathea",
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    },
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      "title": "Population sizes of grizzly bears in Yellowstone from 1959-1997",
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      "object": "teasel",
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        "medium",
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      "table": true,
      "tojson": true
    },
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      "title": "Projection matrices for desert tortoise",
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      "class": [
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      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
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      "object": "whale",
      "class": [
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      "fields": [
        "yearling",
        "juvenile",
        "mature",
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      "table": true,
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    },
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      "title": "Survirvorship data for adult and juvenile Acorn Woodpeckers",
      "object": "woodpecker",
      "class": [
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      ],
      "fields": [
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        "year",
        "start",
        "surv"
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      "table": true,
      "tojson": true
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  "_help": [
    {
      "page": "01Introduction",
      "title": "Introduction to the popbio Package",
      "topics": [
        "01.Introduction",
        "popbio"
      ]
    },
    {
      "page": "02Caswell",
      "title": "Converted Matlab functions from Caswell (2001)",
      "topics": [
        "02.Caswell",
        "Caswell"
      ]
    },
    {
      "page": "03Morris",
      "title": "Converted Matlab functions from Morris and Doak (2002)",
      "topics": [
        "03.Morris",
        "Morris"
      ]
    },
    {
      "page": "aq.census",
      "title": "Annual census data for Aquilegia chrysantha",
      "topics": [
        "aq.census"
      ]
    },
    {
      "page": "aq.matrix",
      "title": "Create a projection matrix for Aquilegia",
      "topics": [
        "aq.matrix"
      ]
    },
    {
      "page": "aq.trans",
      "title": "Annual transition data for Aquilegia chrysantha",
      "topics": [
        "aq.trans"
      ]
    },
    {
      "page": "betaval",
      "title": "Generate beta-distributed random numbers",
      "topics": [
        "betaval"
      ]
    },
    {
      "page": "boot.transitions",
      "title": "Bootstrap observed census transitions",
      "topics": [
        "boot.transitions"
      ]
    },
    {
      "page": "calathea",
      "title": "Projection matrices for a tropical understory herb",
      "topics": [
        "calathea"
      ]
    },
    {
      "page": "countCDFxt",
      "title": "Count-based extinction probabilities and bootstrap confidence intervals",
      "topics": [
        "countCDFxt"
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    },
    {
      "page": "damping.ratio",
      "title": "Damping ratio",
      "topics": [
        "damping.ratio"
      ]
    },
    {
      "page": "eigen.analysis",
      "title": "Eigenvalue and eigenvector analysis of a projection matrix",
      "topics": [
        "eigen.analysis"
      ]
    },
    {
      "page": "elasticity",
      "title": "Elasticity analysis of a projection matrix",
      "topics": [
        "elasticity"
      ]
    },
    {
      "page": "extCDF",
      "title": "Count-based extinction time cumulative distribution function",
      "topics": [
        "extCDF"
      ]
    },
    {
      "page": "fundamental.matrix",
      "title": "Fundamental matrix and age-specific survival",
      "topics": [
        "fundamental.matrix"
      ]
    },
    {
      "page": "generation.time",
      "title": "Generation time",
      "topics": [
        "generation.time"
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    },
    {
      "page": "grizzly",
      "title": "Population sizes of grizzly bears in Yellowstone from 1959-1997",
      "topics": [
        "grizzly"
      ]
    },
    {
      "page": "head2",
      "title": "Return the first and last part of a matrix or dataframe",
      "topics": [
        "head2"
      ]
    },
    {
      "page": "hudcorrs",
      "title": "Correlation matrices for Hudsonia vital rates",
      "topics": [
        "hudcorrs"
      ]
    },
    {
      "page": "hudmxdef",
      "title": "Matrix definition program for Hudsonia vital rates",
      "topics": [
        "hudmxdef"
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    },
    {
      "page": "hudsonia",
      "title": "Projection matrices for mountain golden heather",
      "topics": [
        "hudsonia"
      ]
    },
    {
      "page": "hudvrs",
      "title": "Best Kendall estimates of Hudsonia vital rate means and variances",
      "topics": [
        "hudvrs"
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    },
    {
      "page": "image2",
      "title": "Display a matrix image",
      "topics": [
        "image2"
      ]
    },
    {
      "page": "Kendall",
      "title": "Find the best Kendall's estimates of mean and environmental variance for beta-binomial vital rates",
      "topics": [
        "Kendall"
      ]
    },
    {
      "page": "lambda",
      "title": "Population growth rate",
      "topics": [
        "lambda"
      ]
    },
    {
      "page": "lnorms",
      "title": "Generate random lognormal values for fertility rates",
      "topics": [
        "lnorms"
      ]
    },
    {
      "page": "logi.hist.plot",
      "title": "Plot logistic regression",
      "topics": [
        "logi.hist.plot"
      ]
    },
    {
      "page": "LTRE",
      "title": "Life Table Response Experiment",
      "topics": [
        "LTRE"
      ]
    },
    {
      "page": "matplot2",
      "title": "Plot a matrix",
      "topics": [
        "matplot2"
      ]
    },
    {
      "page": "matrix2",
      "title": "Square matrices",
      "topics": [
        "matrix2"
      ]
    },
    {
      "page": "mean.list",
      "title": "Mean matrix",
      "topics": [
        "mean.list"
      ]
    },
    {
      "page": "monkeyflower",
      "title": "Projection matrices for monkeyflower",
      "topics": [
        "monkeyflower"
      ]
    },
    {
      "page": "multiresultm",
      "title": "Incorporate demographic stochasticity into population projections",
      "topics": [
        "multiresultm"
      ]
    },
    {
      "page": "nematode",
      "title": "Population densities for the sugarbeet cyst nematode",
      "topics": [
        "nematode"
      ]
    },
    {
      "page": "net.reproductive.rate",
      "title": "Net reproductive rate",
      "topics": [
        "net.reproductive.rate"
      ]
    },
    {
      "page": "pfister.plot",
      "title": "Create log-log plots of variance vs. sensitivity and CV vs. elasticity",
      "topics": [
        "pfister.plot"
      ]
    },
    {
      "page": "pop.projection",
      "title": "Calculate population growth rates by projection",
      "topics": [
        "pop.projection"
      ]
    },
    {
      "page": "projection.matrix",
      "title": "Construct projection matrix models using transition frequency tables",
      "topics": [
        "projection.matrix"
      ]
    },
    {
      "page": "QPmat",
      "title": "Build a projection matrix from a time series of individuals (or densities) per stage",
      "topics": [
        "QPmat"
      ]
    },
    {
      "page": "reproductive.value",
      "title": "Reproductive value",
      "topics": [
        "reproductive.value"
      ]
    },
    {
      "page": "resample",
      "title": "Resample a projection matrix",
      "topics": [
        "resample"
      ]
    },
    {
      "page": "secder",
      "title": "Second derivatives of the dominant eigenvalue",
      "topics": [
        "secder"
      ]
    },
    {
      "page": "sensitivity",
      "title": "Sensitivity analysis of a projection matrix",
      "topics": [
        "sensitivity"
      ]
    },
    {
      "page": "splitA",
      "title": "Split a projection matrix into separate T and F matrices",
      "topics": [
        "splitA"
      ]
    },
    {
      "page": "stable.stage",
      "title": "Stable stage distribution",
      "topics": [
        "stable.stage"
      ]
    },
    {
      "page": "stage.vector.plot",
      "title": "Plot stage vector projections",
      "topics": [
        "stage.vector.plot"
      ]
    },
    {
      "page": "stoch.growth.rate",
      "title": "Log stochastic growth rate",
      "topics": [
        "stoch.growth.rate"
      ]
    },
    {
      "page": "stoch.projection",
      "title": "Project stochastic growth from a sequence of matrices",
      "topics": [
        "stoch.projection"
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    },
    {
      "page": "stoch.quasi.ext",
      "title": "Quasi-extinction threshold",
      "topics": [
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    },
    {
      "page": "stoch.sens",
      "title": "Stochastic growth rate sensitivity",
      "topics": [
        "stoch.sens"
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    },
    {
      "page": "stretchbetaval",
      "title": "Stretched beta-distributed random numbers",
      "topics": [
        "stretchbetaval"
      ]
    },
    {
      "page": "teasel",
      "title": "Projection matrix for teasel",
      "topics": [
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    },
    {
      "page": "test.census",
      "title": "Census data for hypothetical plant",
      "topics": [
        "test.census"
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    },
    {
      "page": "tortoise",
      "title": "Projection matrices for desert tortoise",
      "topics": [
        "tortoise"
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    },
    {
      "page": "var2",
      "title": "Variance matrix",
      "topics": [
        "var2"
      ]
    },
    {
      "page": "varEst",
      "title": "Estimate the variance of beta-binomial vital rates",
      "topics": [
        "varEst"
      ]
    },
    {
      "page": "vitalsens",
      "title": "Vital rate sensitivities and elasticities",
      "topics": [
        "vitalsens"
      ]
    },
    {
      "page": "vitalsim",
      "title": "Stochastic vital rate simulations",
      "topics": [
        "vitalsim"
      ]
    },
    {
      "page": "whale",
      "title": "Projection matrix for killer whale",
      "topics": [
        "whale"
      ]
    },
    {
      "page": "woodpecker",
      "title": "Survirvorship data for adult and juvenile Acorn Woodpeckers",
      "topics": [
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      ]
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  "_readme": "https://github.com/cran/popbio/raw/HEAD/README.md",
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