Package: phyloclim 0.9.5
Christoph Heibl
phyloclim: Integrating Phylogenetics and Climatic Niche Modeling
Implements some methods in phyloclimatic modeling: estimation of ancestral climatic niches, age-range-correlation, niche equivalency test and background-similarity test.
Authors:
phyloclim_0.9.5.tar.gz
phyloclim_0.9.5.tar.gz(r-4.5-noble)phyloclim_0.9.5.tar.gz(r-4.4-noble)
phyloclim_0.9.5.tgz(r-4.4-emscripten)phyloclim_0.9.5.tgz(r-4.3-emscripten)
phyloclim.pdf |phyloclim.html✨
phyloclim/json (API)
| # Install 'phyloclim' in R: |
| install.packages('phyloclim', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:c2134c7892. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 24 2024 |
| R-4.5-linux | OK | Aug 24 2024 |
Exports:age.range.correlationanc.climbg.similarity.testniche.equivalency.testniche.overlapplotAncClimplotPNOpno
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Phyloclimatic Data Analysis | phyloclim-package phyloclim |
| Age-Range Correlation | age.range.correlation |
| Estimation of Ancestral Climatic Tolerances | anc.clim |
| Niche overlap for Oxalis enneaphylla and O. lacinita | equ sim |
| Niche Equivalency and Background Similarity Test | bg.similarity.test identity.test niche.equivalency.test niche.identity.test plot.ntest print.ntest |
| Quantification of Niche Overlap | niche.overlap |
| _Oxalis_ section _Palmatifoliae_ | palmatifoliae PNO sites tree |
| Chronograms with Climatic Data on the Y-Axis | plotAncClim |
| Plot Predicted Niche Occupancy Profiles | plotPNO |
| Predicted Niche Occupancy Profiles | pno |
| Weighted means of niche dimensions | pno.weighted.mean |