Introduction | 1. Viewing Available Palettes | 2. Usage with ggplot2 | 3. Plotting Trees and Cladograms | Phylogenetic Tree | Cladogram | 4. Generating Custom Palettes
Package: mycolorsTB 0.1.1
Paula Ruiz-Rodriguez
mycolorsTB: Color Palettes for Mycobacterium Tuberculosis Data Visualization
Colour palettes and helper functions for visualising Mycobacterium tuberculosis genomic and epidemiological data with 'ggplot2' and 'ggtree'. The package provides predefined palettes, scale functions, tree/cladogram helpers, and convenient preview tools to ensure consistent branding in pathogen-omics visualisations. The palettes were developed as part of the 'mycolorsTB' project <https://github.com/PathoGenOmics-Lab/mycolorsTB>.
Authors:
mycolorsTB_0.1.1.tar.gz
mycolorsTB_0.1.1.tar.gz(r-4.7-any)mycolorsTB_0.1.1.tar.gz(r-4.6-any)
mycolorsTB_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
mycolorsTB/json (API)
| # Install 'mycolorsTB' in R: |
| install.packages('mycolorsTB', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8ea6a35906. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 166 | ||
| source / vignettes | OK | 168 | ||
| linux-release-x86_64 | OK | 157 | ||
| wasm-release | OK | 128 |
Exports:classicTBmycolorspathogenomicsplot_tb_cladogramplot_tb_treescale_color_classicTBscale_color_mycolorsscale_fill_classicTBscale_fill_mycolorstb_paletteview_palette
Dependencies:apeaplotbase64encbslibcachemclicpp11digestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggfunggiraphggplot2ggplotifyggtreegluegridGraphicsgtablehighrhtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSmemoisemimenlmepatchworkpillarpkgconfigpurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeioutf8vctrsviridisLitewithrxfunyamlyulab.utils
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ClassicTB Color Palette | classicTB |
| Mycolors Color Palette | mycolors |
| PathoGenOmics Color Palette | pathogenomics |
| Plot a Phylogenetic Cladogram with TB Lineage Colors | plot_tb_cladogram |
| Plot a Phylogenetic Tree with TB Lineage Colors | plot_tb_tree |
| Scale Color for ggplot2 Using classicTB Palette | scale_color_classicTB |
| Scale Color for ggplot2 Using mycolors Palette | scale_color_mycolors |
| Scale Fill for ggplot2 Using classicTB Palette | scale_fill_classicTB |
| Scale Fill for ggplot2 Using mycolors Palette | scale_fill_mycolors |
| Generate n colors from a mycolorsTB palette | tb_palette |
| Display a color palette | view_palette |