Package: mt.surv 1.1.1

Alexander Loncar
mt.surv: Multi-Threshold Survival Analysis
Implements survival analyses across multiple abundance thresholds, repeatedly partitioning samples into groups and evaluating survival differences to assess taxonomic associations with outcomes.
Authors:
mt.surv_1.1.1.tar.gz
mt.surv_1.1.1.tar.gz(r-4.7-any)mt.surv_1.1.1.tar.gz(r-4.6-any)
mt.surv_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mt.surv/json (API)
| # Install 'mt.surv' in R: |
| install.packages('mt.surv', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8623f123c3. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 150 | ||
| source / vignettes | OK | 205 | ||
| linux-release-x86_64 | OK | 151 | ||
| wasm-release | OK | 133 |
Exports:%>%butterfly_inputcalculateAreaStackBarinputsurvival_plotsurvivalByQuantileToWide
Dependencies:backportsbroomclicpp11dplyrfarverforcatsgenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMatrixpillarpkgconfigpurrrR6RColorBrewerrlangS7scalesstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generate input for butterfly plot | butterfly_input |
| Quantify taxonomy significance using multi-threshold results | calculateArea |
| Generate input objects for stacked bar plots | StackBarinput |
| Make survival curve | survival_plot |
| Compute cox model p-value under various threshold | survivalByQuantile |
| Change data frame into wide format and match survival data | ToWide |