{
  "_id": "6a0f6580acfb0bcc41c5d17d",
  "Package": "mt.surv",
  "Type": "Package",
  "Title": "Multi-Threshold Survival Analysis",
  "Version": "1.1.1",
  "Authors@R": "c(person(given = \"Rebecca\",\nfamily = \"Hoyd\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-1210-4491\")),\nperson(given = \"Alexander\",\nfamily = \"Loncar\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alexander.loncar@osumc.edu\",\ncomment = c(ORCID = \"0009-0000-8079-2092\")),\nperson(given = \"YunZhou\",\nfamily = \"Liu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-9892-2438\")),\nperson(given = \"Caroline\",\nfamily = \"Wheeler\",\nrole = c(\"aut\")),\nperson(given = \"Daniel\",\nfamily = \"Spakowicz\",\nrole = c(\"aut\"),\nemail = \"daniel.spakowicz@osumc.edu\",\ncomment = c(ORCID = \"0000-0003-2314-6435\"))\n)",
  "Description": "Implements survival analyses across multiple abundance\nthresholds, repeatedly partitioning samples into groups and\nevaluating survival differences to assess taxonomic\nassociations with outcomes.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 09:59:12 UTC",
    "User": "root"
  },
  "Author": "Rebecca Hoyd [aut] (ORCID:\n<https://orcid.org/0000-0003-1210-4491>), Alexander Loncar\n[aut, cre] (ORCID: <https://orcid.org/0009-0000-8079-2092>),\nYunZhou Liu [aut] (ORCID:\n<https://orcid.org/0000-0002-9892-2438>), Caroline Wheeler\n[aut], Daniel Spakowicz [aut] (ORCID:\n<https://orcid.org/0000-0003-2314-6435>)",
  "Maintainer": "Alexander Loncar <alexander.loncar@osumc.edu>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-04-21 19:42:26 UTC",
  "RemoteUrl": "https://github.com/cran/mt.surv",
  "RemoteRef": "HEAD",
  "RemoteSha": "8623f123c33b4cc15b9cc07573eafff4e6ee825a",
  "MD5sum": "ed6e4e17b8d71d4e4b59fe13119e5abe",
  "_user": "cran",
  "_type": "src",
  "_file": "mt.surv_1.1.1.tar.gz",
  "_fileid": "df5c776280c4a1eb013e1e95aa37b87b1fd1ccf4af5596fb124d5b5ffc09d18a",
  "_filesize": 405222,
  "_sha256": "df5c776280c4a1eb013e1e95aa37b87b1fd1ccf4af5596fb124d5b5ffc09d18a",
  "_created": "2026-05-21T09:59:12.000Z",
  "_published": "2026-05-21T20:05:20.695Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77258326500,
      "time": 150,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7132819284"
    },
    {
      "job": 77258326474,
      "time": 151,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7132819772"
    },
    {
      "job": 77258326214,
      "time": 205,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7132766683"
    },
    {
      "job": 77258326032,
      "time": 133,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7145989430"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26218927235",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/mt.surv",
  "_commit": {
    "id": "8623f123c33b4cc15b9cc07573eafff4e6ee825a",
    "author": "Alexander Loncar <alexander.loncar@osumc.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.1\n",
    "time": 1776800546
  },
  "_maintainer": {
    "name": "Alexander Loncar",
    "email": "alexander.loncar@osumc.edu"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "broom",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "survminer",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-17",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.1.1",
      "date": "2026-04-21"
    }
  ],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 517,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mt.surv"
  },
  "_mentions": 5,
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mt.surv.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1.1",
      "date": "2026-04-21"
    }
  ],
  "_exports": [
    "%>%",
    "butterfly_input",
    "calculateArea",
    "StackBarinput",
    "survival_plot",
    "survivalByQuantile",
    "ToWide"
  ],
  "_help": [
    {
      "page": "butterfly_input",
      "title": "Generate input for butterfly plot",
      "topics": [
        "butterfly_input"
      ]
    },
    {
      "page": "calculateArea",
      "title": "Quantify taxonomy significance using multi-threshold results",
      "topics": [
        "calculateArea"
      ]
    },
    {
      "page": "StackBarinput",
      "title": "Generate input objects for stacked bar plots",
      "topics": [
        "StackBarinput"
      ]
    },
    {
      "page": "survival_plot",
      "title": "Make survival curve",
      "topics": [
        "survival_plot"
      ]
    },
    {
      "page": "survivalByQuantile",
      "title": "Compute cox model p-value under various threshold",
      "topics": [
        "survivalByQuantile"
      ]
    },
    {
      "page": "ToWide",
      "title": "Change data frame into wide format and match survival data",
      "topics": [
        "ToWide"
      ]
    }
  ],
  "_readme": "https://github.com/cran/mt.surv/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "broom",
    "cli",
    "cpp11",
    "dplyr",
    "farver",
    "forcats",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 2.3979400086720375,
  "_indexed": true,
  "_nocasepkg": "mt.surv",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.1",
      "date": "2026-05-21T10:01:36.000Z",
      "distro": "noble",
      "commit": "8623f123c33b4cc15b9cc07573eafff4e6ee825a",
      "fileid": "a3c5b86a6f3450de188e23e83000a3f51d66877685d0beb16523f273a463eef7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26218927235"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.1",
      "date": "2026-05-21T10:01:35.000Z",
      "distro": "noble",
      "commit": "8623f123c33b4cc15b9cc07573eafff4e6ee825a",
      "fileid": "01787b33ba6041b4a6bb91bc5a3ed4cce9aa55d4b8be0428488dea140a4b4bc1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26218927235"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.1",
      "date": "2026-05-21T20:05:04.000Z",
      "commit": "8623f123c33b4cc15b9cc07573eafff4e6ee825a",
      "fileid": "7f8afc217cea49e01a81b48a425925c9abaa535b50b8f79c9441d753c83ddce3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26218927235"
    }
  ]
}