Package: mpwR 0.1.5

Oliver Kardell

mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

Useful functions to analyze proteomic workflows including number of identifications, data completeness, missed cleavages, quantitative and retention time precision etc. Various software outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN' and 'MaxQuant'.

Authors:Oliver Kardell [aut, cre]

mpwR_0.1.5.tar.gz
mpwR_0.1.5.tar.gz(r-4.5-noble)mpwR_0.1.5.tar.gz(r-4.4-noble)
mpwR_0.1.5.tgz(r-4.4-emscripten)mpwR_0.1.5.tgz(r-4.3-emscripten)
mpwR.pdf |mpwR.html✨
mpwR/json (API)
NEWS

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

22 exports 0.00 score 76 dependencies 9 scripts 327 downloads

Last updated 10 months agofrom:34175ea1a4. Checks:OK: 2. Indexed: yes.

Exports:create_exampleget_CV_LFQ_pepget_CV_LFQ_pgget_CV_RTget_DC_Reportget_ID_Reportget_MC_Reportget_summary_Reportget_Upset_listload_experimental_designplot_CV_densityplot_DC_barplotplot_DC_stacked_barplotplot_ID_barplotplot_ID_boxplotplot_MC_barplotplot_MC_stacked_barplotplot_radarchartplot_Upsetprepare_mpwRwrite_experimental_designwrite_generic_template

Dependencies:askpassbase64encbslibcachemclicolorspacecomprehenrcpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapflowTraceRfontawesomeforcatsfsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexUpSetRutf8vctrsviridisLitewithrxfunyaml