Package: mpwR 0.1.5.1

Oliver Kardell

mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

Useful functions to analyze proteomic workflows including number of identifications, data completeness, missed cleavages, quantitative and retention time precision etc. Various software outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN' and 'MaxQuant'.

Authors:Oliver Kardell [aut, cre]

mpwR_0.1.5.1.tar.gz
mpwR_0.1.5.1.tar.gz(r-4.7-any)mpwR_0.1.5.1.tar.gz(r-4.6-any)
mpwR_0.1.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mpwR/json (API)

# Install 'mpwR' in R:
install.packages('mpwR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.30 score 8 scripts 323 downloads 22 exports 70 dependencies

Last updated from:75723f4212. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK185
source / vignettesOK210
linux-release-x86_64OK175
wasm-releaseOK135

Exports:create_exampleget_CV_LFQ_pepget_CV_LFQ_pgget_CV_RTget_DC_Reportget_ID_Reportget_MC_Reportget_summary_Reportget_Upset_listload_experimental_designplot_CV_densityplot_DC_barplotplot_DC_stacked_barplotplot_ID_barplotplot_ID_boxplotplot_MC_barplotplot_MC_stacked_barplotplot_radarchartplot_Upsetprepare_mpwRwrite_experimental_designwrite_generic_template

Dependencies:askpassbase64encbslibcachemclicomprehenrcpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapflowTraceRfontawesomeforcatsfsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeopensslotelpillarpkgconfigplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystibbletidyrtidyselecttinytexUpSetRutf8vctrsviridisLitewithrxfunyaml

Output Explanations
Introduction | Data Completeness | Overview perspective | Individual perspective | Cumulative density plot | Radar chart
Rendered fromOutput_Explanations.Rmdusingknitr::rmarkdown

Last update: 2023-11-14
Started: 2023-11-14

Requirements
Introduction | Spectronaut | MaxQuant | DIA-NN | Proteome Discoverer
Rendered fromRequirements.Rmdusingknitr::rmarkdown

Last update: 2023-11-14
Started: 2022-06-22

Import
Introduction | Naming Files | Suffix | Prefix | Handling Error Messages
Rendered fromImport.Rmdusingknitr::rmarkdown

Last update: 2022-06-22
Started: 2022-06-22

Workflow
Introduction | Loading R packages | Import | Import your data | Examples | Number of Identifications | Report | Individual | Absolute | Preparation | Peptide-level | Proteingroup-level | Plot | Inter-software Comparison - flowTraceR | Precursor-level without flowTraceR | Precursor-level with flowTraceR | Overview | Details
Rendered fromWorkflow.Rmdusingknitr::rmarkdown

Last update: 2022-06-22
Started: 2022-06-22