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  "Title": "Standardized Comparison of Workflows in Mass Spectrometry-Based\nBottom-Up Proteomics",
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  "Description": "Useful functions to analyze proteomic workflows including\nnumber of identifications, data completeness, missed cleavages,\nquantitative and retention time precision etc. Various software\noutputs are supported such as 'ProteomeDiscoverer',\n'Spectronaut', 'DIA-NN' and 'MaxQuant'.",
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  "Repository": "https://cran.r-universe.dev",
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    "plot_DC_stacked_barplot",
    "plot_ID_barplot",
    "plot_ID_boxplot",
    "plot_MC_barplot",
    "plot_MC_stacked_barplot",
    "plot_radarchart",
    "plot_Upset",
    "prepare_mpwR",
    "write_experimental_design",
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      "title": "Peptide-level: Quantitative precision",
      "topics": [
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    },
    {
      "page": "get_CV_LFQ_pg",
      "title": "Proteingroup-level: Quantitative precision",
      "topics": [
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    },
    {
      "page": "get_CV_RT",
      "title": "Retention time precision",
      "topics": [
        "get_CV_RT"
      ]
    },
    {
      "page": "get_DC_Report",
      "title": "Data Completeness Report",
      "topics": [
        "get_DC_Report"
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    },
    {
      "page": "get_ID_Report",
      "title": "Report for identifications",
      "topics": [
        "get_ID_Report"
      ]
    },
    {
      "page": "get_MC_Report",
      "title": "Report about Missed Cleavages",
      "topics": [
        "get_MC_Report"
      ]
    },
    {
      "page": "get_summary_Report",
      "title": "Summary report",
      "topics": [
        "get_summary_Report"
      ]
    },
    {
      "page": "get_Upset_list",
      "title": "Generate Upset list",
      "topics": [
        "get_Upset_list"
      ]
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    {
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      "topics": [
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      ]
    },
    {
      "page": "plot_CV_density",
      "title": "Density plot",
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    },
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      "title": "Individual Barplots - Data Completeness",
      "topics": [
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      "page": "plot_DC_stacked_barplot",
      "title": "Summary Barplot - Data Completeness",
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      ]
    },
    {
      "page": "plot_ID_barplot",
      "title": "Individual Barplots - Identifications",
      "topics": [
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      ]
    },
    {
      "page": "plot_ID_boxplot",
      "title": "Summary Boxplot - Identifications",
      "topics": [
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      ]
    },
    {
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      "title": "Individual Barplots - Missed Cleavages",
      "topics": [
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      ]
    },
    {
      "page": "plot_MC_stacked_barplot",
      "title": "Summary Barplot - Missed Cleavages",
      "topics": [
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    },
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      "title": "Radar chart",
      "topics": [
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      ]
    },
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