Package: mixedBayes 0.1.4.1

Kun Fan

mixedBayes: Bayesian Longitudinal Regularized Quantile Mixed Model

In longitudinal studies, the same subjects are measured repeatedly over time, leading to correlations among the repeated measurements. Properly accounting for the intra-cluster correlations in the presence of data heterogeneity and long tailed distributions of the disease phenotype is challenging, especially in the context of high dimensional regressions. In this package, we developed a Bayesian quantile mixed effects model with spike- and -slab priors to dissect important gene - environment interactions under longitudinal genomics studies. An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.

Authors:Kun Fan [aut, cre], Cen Wu [aut]

mixedBayes_0.1.4.1.tar.gz
mixedBayes_0.1.4.1.tar.gz(r-4.5-noble)mixedBayes_0.1.4.1.tar.gz(r-4.4-noble)
mixedBayes_0.1.4.1.tgz(r-4.4-emscripten)mixedBayes_0.1.4.1.tgz(r-4.3-emscripten)
mixedBayes.pdf |mixedBayes.html
mixedBayes/json (API)

# Install 'mixedBayes' in R:
install.packages('mixedBayes', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kunfa/mixedbayes/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • X - Simulated data for demonstrating the features of mixedBayes
  • coeff - Simulated data for demonstrating the features of mixedBayes
  • e - Simulated data for demonstrating the features of mixedBayes
  • g - Simulated data for demonstrating the features of mixedBayes
  • k - Simulated data for demonstrating the features of mixedBayes
  • w - Simulated data for demonstrating the features of mixedBayes
  • y - Simulated data for demonstrating the features of mixedBayes

openblascppopenmp

2.40 score 286 downloads 2 exports 2 dependencies

Last updated 4 days agofrom:9c5e3ea3b9. Checks:2 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-linux-x86_64OKJan 29 2025

Exports:mixedBayesselection

Dependencies:RcppRcppArmadillo