Package: microbiomeMQC 1.0.2

Jacob Dehinsilu

microbiomeMQC: Calculate 4 Key Reporting Measures

Perform calculations for the WHO International Reference Reagents for the microbiome. Using strain, species or genera abundance tables generated through analysis of 16S ribosomal RNA sequencing or shotgun sequencing which included a reference reagent. This package will calculate measures of sensitivity, False positive relative abundance, diversity, and similarity based on mean average abundances with respect to the reference reagent.

Authors:Jacob Dehinsilu [aut, cre], Ravneet Bhuller [aut]

microbiomeMQC_1.0.2.tar.gz
microbiomeMQC_1.0.2.tar.gz(r-4.5-noble)microbiomeMQC_1.0.2.tar.gz(r-4.4-noble)
microbiomeMQC_1.0.2.tgz(r-4.4-emscripten)microbiomeMQC_1.0.2.tgz(r-4.3-emscripten)
microbiomeMQC.pdf |microbiomeMQC.html✨
microbiomeMQC/json (API)

# Install 'microbiomeMQC' in R:
install.packages('microbiomeMQC', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 170 downloads 1 exports 28 dependencies

Last updated 3 months agofrom:6f10af5495. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 16 2024
R-4.5-linuxOKDec 16 2024

Exports:microbiomeMQC

Dependencies:cellrangercliclustercpp11crayonfansigluehmslatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepillarpkgconfigprettyunitsprogressR6readxlrematchrlangtibbleutf8vctrsvegan

Using microbiomeMQC

Rendered fromusing_microbiomeMQC.Rmdusingknitr::rmarkdownon Dec 16 2024.

Last update: 2024-09-17
Started: 2024-09-17