Package: miLineage 2.1

Zheng-Zheng Tang

miLineage: Association Tests for Microbial Lineages on a Taxonomic Tree

A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) <doi:10.1093/bioinformatics/btw804> and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).

Authors:Zheng-Zheng Tang

miLineage_2.1.tar.gz
miLineage_2.1.tar.gz(r-4.5-noble)miLineage_2.1.tar.gz(r-4.4-noble)
miLineage_2.1.tgz(r-4.4-emscripten)miLineage_2.1.tgz(r-4.3-emscripten)
miLineage.pdf |miLineage.html✨
miLineage/json (API)

# Install 'miLineage' in R:
install.packages('miLineage', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • data.real - Real data that include an OTU table, a taxonomy table, and a covariate table
  • data.toy - Simulated data that include an OTU table, a taxonomy table, and a covariate table

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.40 score 25 scripts 187 downloads 1 mentions 3 exports 26 dependencies

Last updated 7 years agofrom:03f9485fa9. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 06 2024
R-4.5-linuxOKNov 06 2024

Exports:QCATQCAT_GEEZIGDM

Dependencies:backportsbroomclicpp11data.tabledplyrfansigeepackgenericsgluelifecyclemagrittrMASSpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr