Package: miLineage 2.1

Zheng-Zheng Tang

miLineage: Association Tests for Microbial Lineages on a Taxonomic Tree

A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) <doi:10.1093/bioinformatics/btw804> and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).

Authors:Zheng-Zheng Tang

miLineage_2.1.tar.gz
miLineage_2.1.tar.gz(r-4.7-any)miLineage_2.1.tar.gz(r-4.6-any)
miLineage_2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
miLineage/json (API)

# Install 'miLineage' in R:
install.packages('miLineage', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • data.real - Real data that include an OTU table, a taxonomy table, and a covariate table
  • data.toy - Simulated data that include an OTU table, a taxonomy table, and a covariate table

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.40 score 25 scripts 269 downloads 1 mentions 3 exports 25 dependencies

Last updated from:03f9485fa9. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK188
source / vignettesOK180
linux-release-x86_64OK130
wasm-releaseOK107

Exports:QCATQCAT_GEEZIGDM

Dependencies:backportsbroomclicpp11data.tabledplyrgeepackgenericsgluelifecyclemagrittrMASSpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr