{ "_id": "6a21563ccd65a98ecbd2e3c7", "Package": "miLineage", "Type": "Package", "Title": "Association Tests for Microbial Lineages on a Taxonomic Tree", "Version": "2.1", "Date": "2018-03-09", "Author": "Zheng-Zheng Tang", "Maintainer": "Zheng-Zheng Tang ", "Description": "A variety of association tests for microbiome data\nanalysis including Quasi-Conditional Association Tests (QCAT)\ndescribed in Tang Z.-Z. et al.(2017)\n and Zero-Inflated\nGeneralized Dirichlet Multinomial (ZIGDM) tests described in\nTang Z.-Z. & Chen G. (2017, submitted).", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 10:38:22 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2018-03-22 23:01:09 UTC", "RemoteUrl": "https://github.com/cran/miLineage", "RemoteRef": "HEAD", "RemoteSha": "03f9485fa9bdb49090233c94eec4c866d5c670ba", "MD5sum": "1e82cc3215f2c6ccda8f02dffb4b8b9a", "_user": "cran", "_type": "src", "_file": "miLineage_2.1.tar.gz", "_fileid": "23ff50e26a046d3cb60e0122badedfe445c11573bc441d5da2af743ccb38c847", "_filesize": 147646, "_sha256": "23ff50e26a046d3cb60e0122badedfe445c11573bc441d5da2af743ccb38c847", "_created": "2026-06-04T10:38:22.000Z", "_published": "2026-06-04T10:41:00.535Z", "_distro": "noble", "_jobs": [ { "job": 79501140284, "time": 127, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7409339586" }, { "job": 79501140267, "time": 125, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7409338740" }, { "job": 79500776172, "time": 144, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7409299882" }, { "job": 79501140268, "time": 96, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7409329655" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26946509431", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/miLineage", "_commit": { "id": "03f9485fa9bdb49090233c94eec4c866d5c670ba", "author": "Zheng-Zheng Tang ", "committer": "cran-robot ", "message": "version 2.1\n", "time": 1521759669 }, "_maintainer": { "name": "Zheng-Zheng Tang", "email": "tang@biostat.wisc.edu" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.1", "role": "Depends" }, { "package": "MASS", "role": "Depends" }, { "package": "data.table", "role": "Depends" }, { "package": "geepack", "role": "Depends" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 128, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/miLineage" }, "_mentions": 1, "_searchresults": 25, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/miLineage.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "2.0", "date": "2017-10-20" }, { "version": "2.1", "date": "2018-03-23" } ], "_exports": [ "QCAT", "QCAT_GEE", "ZIGDM" ], "_datasets": [ { "name": "data.real", "title": "Real data that include an OTU table, a taxonomy table, and a covariate table", "object": "data.real", "file": "data.real.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "data.toy", "title": "Simulated data that include an OTU table, a taxonomy table, and a covariate table", "object": "data.toy", "file": "data.toy.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "miLineage-package", "title": "Association Tests for Microbial Lineages on a Taxonomic Tree", "topics": [ "miLineage-package", "miLineage" ] }, { "page": "data.real", "title": "Real data that include an OTU table, a taxonomy table, and a covariate table", "topics": [ "data.real" ] }, { "page": "data.toy", "title": "Simulated data that include an OTU table, a taxonomy table, and a covariate table", "topics": [ "data.toy" ] }, { "page": "QCAT", "title": "Quasi-Conditional Association Test (QCAT)", "topics": [ "QCAT" ] }, { "page": "QCAT_GEE", "title": "QCAT+GEE Two-Part Test", "topics": [ "QCAT_GEE" ] }, { "page": "ZIGDM", "title": "Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) Tests", "topics": [ "ZIGDM" ] } ], "_rundeps": [ "backports", "broom", "cli", "cpp11", "data.table", "dplyr", "geepack", "generics", "glue", "lifecycle", "magrittr", "MASS", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_score": 1.3979400086720375, "_indexed": true, "_nocasepkg": "milineage", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1", "date": "2026-06-04T10:40:15.000Z", "distro": "noble", "commit": "03f9485fa9bdb49090233c94eec4c866d5c670ba", "fileid": "1402a87763cb9b2002580cdabe3481ea4aa3a2786bfd59f483474312560ae384", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26946509431" }, { "r": "4.6.0", "os": "linux", "version": "2.1", "date": "2026-06-04T10:40:12.000Z", "distro": "noble", "commit": "03f9485fa9bdb49090233c94eec4c866d5c670ba", "fileid": "ce3cae915b6c22384e3376eab708507db728acead67d0bb1ebfcfd20708f84b1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26946509431" }, { "r": "4.6.0", "os": "wasm", "version": "2.1", "date": "2026-06-04T10:40:15.000Z", "commit": "03f9485fa9bdb49090233c94eec4c866d5c670ba", "fileid": "e5d2362259d257964f45ec77f6a5aec5f561ee0448ff79c15bf0bcb878d29a33", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26946509431" } ] }