Loading necessary libraries | PBMC-3K UMAP | PBMC-3K t-SNE | Aya | Chia-Jung | Vladimir Shitov | Session info
This package is considered a duplicate. The official version of this package is found at:https://alserglab.r-universe.dev/mascarade
Package: mascarade 0.4.1
Alexey Sergushichev
mascarade: Generating Cluster Masks for Single-Cell Dimensional Reduction Plots
Implements a procedure to automatically generate 2D masks for clusters on dimensional reduction plots from methods like t-SNE (t-distributed stochastic neighbor embedding) or UMAP (uniform manifold approximation and projection), with a focus on single-cell RNA-sequencing data.
Authors:
mascarade_0.4.1.tar.gz
mascarade_0.4.1.tar.gz(r-4.7-arm64)mascarade_0.4.1.tar.gz(r-4.7-x86_64)mascarade_0.4.1.tar.gz(r-4.6-arm64)mascarade_0.4.1.tar.gz(r-4.6-x86_64)
mascarade_0.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mascarade/json (API)
| # Install 'mascarade' in R: |
| install.packages('mascarade', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alserglab/mascarade/issues
Pkgdown/docs site:https://alserglab.github.io
Datasets:
- exampleMascarade - Example data with UMAP points from PBMC3K dataset.
Last updated from:936100fa30. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 267 | ||
| linux-devel-x86_64 | OK | 291 | ||
| source / vignettes | OK | 418 | ||
| linux-release-arm64 | OK | 266 | ||
| linux-release-x86_64 | OK | 314 | ||
| wasm-release | OK | 231 |
Exports:fancyMaskgenerateMaskgenerateMaskSeuratgeom_mark_shape
Dependencies:abindbase64encBHclicpp11data.tabledeldirfarverggforceggplot2gluegoftestgtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixnlmepolyclippolylabelrR6RColorBrewerRcpprlangS7scalesspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilssystemfontstensortidyselecttweenrvctrsviridisLitewithr
Gallery of mascarade-generaded masks
Last update: 2026-07-22
Started: 2026-01-12
Using mascarade package
Package installation | Loading necessary libraries | Example run | Working with Seurat | Session info
Last update: 2026-07-22
Started: 2026-01-12
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example data with UMAP points from PBMC3K dataset. | exampleMascarade |
| Generate ggplot2 layers for a labeled cluster mask | fancyMask |
| Generate mask for clusters on 2D dimensional reduction plots | generateMask |
| Generates mask from a Seurat object. Requires 'SeuratObject' package. | generateMaskSeurat |
| Annotate areas with polygonal shapes | geom_mark_shape |
