{
  "_id": "6a601b1d14e95619b75d7f1b",
  "Package": "mascarade",
  "Type": "Package",
  "Title": "Generating Cluster Masks for Single-Cell Dimensional Reduction\nPlots",
  "Version": "0.4.1",
  "Authors@R": "person(\"Alexey\", \"Sergushichev\", email = \"alsergbox@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "Implements a procedure to automatically generate 2D masks\nfor clusters on dimensional reduction plots from methods like\nt-SNE (t-distributed stochastic neighbor embedding) or UMAP\n(uniform manifold approximation and projection), with a focus\non single-cell RNA-sequencing data.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://alserglab.github.io/mascarade/",
  "BugReports": "https://github.com/alserglab/mascarade/issues",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-22 01:14:37 UTC",
    "User": "root"
  },
  "Author": "Alexey Sergushichev [aut, cre]",
  "Maintainer": "Alexey Sergushichev <alsergbox@gmail.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-07-22 00:12:25 UTC",
  "RemoteUrl": "https://github.com/cran/mascarade",
  "RemoteRef": "HEAD",
  "RemoteSha": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
  "_user": "cran",
  "_type": "src",
  "_file": "mascarade_0.4.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/6b6bcb74a312fbcea1bac76ffda2fd085c5720f252031aa0156ef10e1d136c77",
  "_filesize": 4131922,
  "_sha256": "6b6bcb74a312fbcea1bac76ffda2fd085c5720f252031aa0156ef10e1d136c77",
  "_expires": "2026-10-30T01:21:30.000Z",
  "_created": "2026-07-22T01:14:37.000Z",
  "_published": "2026-07-22T01:21:32.862Z",
  "_jobs": [
    {
      "job": 88806505004,
      "time": 267,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8515405615"
    },
    {
      "job": 88806505094,
      "time": 291,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8515411958"
    },
    {
      "job": 88806505033,
      "time": 266,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8515405546"
    },
    {
      "job": 88806505043,
      "time": 314,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8515418076"
    },
    {
      "job": 88805528343,
      "time": 418,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8515333920"
    },
    {
      "job": 88806504991,
      "time": 231,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8515397011"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/29882272589",
  "_status": "success",
  "_upstream": "https://github.com/cran/mascarade",
  "_commit": {
    "id": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
    "author": "Alexey Sergushichev <alsergbox@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.4.1\n",
    "time": 1784679145
  },
  "_maintainer": {
    "name": "Alexey Sergushichev",
    "email": "alsergbox@gmail.com",
    "login": "assaron",
    "bluesky": "@asergushichev.bsky.social",
    "twitter": "@assaron",
    "description": "Assistant Professor @ Wash U Immunology",
    "uuid": 1040217
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "spatstat.geom",
      "version": ">= 3.7-3",
      "role": "Imports"
    },
    {
      "package": "spatstat.explore",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "polyclip",
      "role": "Imports"
    },
    {
      "package": "polylabelr",
      "role": "Imports"
    },
    {
      "package": "ggforce",
      "role": "Imports"
    },
    {
      "package": "vctrs",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "systemfonts",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.1.5",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    },
    {
      "package": "Seurat",
      "role": "Suggests"
    },
    {
      "package": "scales",
      "role": "Suggests"
    },
    {
      "package": "SeuratObject",
      "role": "Suggests"
    },
    {
      "package": "svglite",
      "role": "Suggests"
    },
    {
      "package": "colorrepel",
      "version": ">= 0.5.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2026-03",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 1
    },
    {
      "week": "2026-28",
      "n": 1
    },
    {
      "week": "2026-30",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.3.0",
      "date": "2026-01-12"
    },
    {
      "name": "0.3.1",
      "date": "2026-02-13"
    },
    {
      "name": "0.3.2",
      "date": "2026-03-06"
    },
    {
      "name": "0.3.3",
      "date": "2026-03-24"
    },
    {
      "name": "0.3.4",
      "date": "2026-04-14"
    },
    {
      "name": "0.3.5",
      "date": "2026-07-08"
    },
    {
      "name": "0.4.1",
      "date": "2026-07-22"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "assaron",
      "count": 7,
      "uuid": 1040217
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 622,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 546,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mascarade"
  },
  "_devurl": "https://github.com/alserglab/mascarade",
  "_pkgdown": "https://alserglab.github.io/mascarade/",
  "_searchresults": 16,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mascarade.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/alserglab/mascarade",
  "_realowner": "alserglab",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.3.0",
      "date": "2026-01-12"
    },
    {
      "version": "0.3.1",
      "date": "2026-02-16"
    },
    {
      "version": "0.3.2",
      "date": "2026-03-06"
    },
    {
      "version": "0.3.3",
      "date": "2026-03-24"
    },
    {
      "version": "0.3.4",
      "date": "2026-04-14"
    },
    {
      "version": "0.3.5",
      "date": "2026-07-08"
    }
  ],
  "_exports": [
    "fancyMask",
    "generateMask",
    "generateMaskSeurat",
    "geom_mark_shape"
  ],
  "_datasets": [
    {
      "name": "exampleMascarade",
      "title": "Example data with UMAP points from PBMC3K dataset.",
      "object": "exampleMascarade",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "exampleMascarade",
      "title": "Example data with UMAP points from PBMC3K dataset.",
      "topics": [
        "exampleMascarade"
      ]
    },
    {
      "page": "fancyMask",
      "title": "Generate ggplot2 layers for a labeled cluster mask",
      "topics": [
        "fancyMask"
      ]
    },
    {
      "page": "generateMask",
      "title": "Generate mask for clusters on 2D dimensional reduction plots",
      "topics": [
        "generateMask"
      ]
    },
    {
      "page": "generateMaskSeurat",
      "title": "Generates mask from a Seurat object. Requires 'SeuratObject' package.",
      "topics": [
        "generateMaskSeurat"
      ]
    },
    {
      "page": "geom_mark_shape",
      "title": "Annotate areas with polygonal shapes",
      "concept": [
        "mark geoms"
      ],
      "topics": [
        "geom_mark_shape"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "base64enc",
    "BH",
    "cli",
    "cpp11",
    "data.table",
    "deldir",
    "farver",
    "ggforce",
    "ggplot2",
    "glue",
    "goftest",
    "gtable",
    "isoband",
    "jsonlite",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "nlme",
    "polyclip",
    "polylabelr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "spatstat.data",
    "spatstat.explore",
    "spatstat.geom",
    "spatstat.random",
    "spatstat.sparse",
    "spatstat.univar",
    "spatstat.utils",
    "systemfonts",
    "tensor",
    "tidyselect",
    "tweenr",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "mascarade-gallery.Rmd",
      "filename": "mascarade-gallery.html",
      "title": "Gallery of mascarade-generaded masks",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Loading necessary libraries",
        "PBMC-3K UMAP",
        "PBMC-3K t-SNE",
        "Aya",
        "Chia-Jung",
        "Vladimir Shitov",
        "Session info"
      ],
      "created": "2026-01-12 20:20:02",
      "modified": "2026-07-22 00:12:25",
      "commits": 2
    },
    {
      "source": "mascarade-tutorial.Rmd",
      "filename": "mascarade-tutorial.html",
      "title": "Using mascarade package",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Package installation",
        "Loading necessary libraries",
        "Example run",
        "Working with Seurat",
        "Session info"
      ],
      "created": "2026-01-12 20:20:02",
      "modified": "2026-07-22 00:12:25",
      "commits": 3
    }
  ],
  "_score": 3.8273692730538253,
  "_indexed": false,
  "_nocasepkg": "mascarade",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://alserglab.r-universe.dev/mascarade",
  "_previous": "0.3.5",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.1",
      "date": "2026-07-22T01:18:31.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
      "fileid": "https://r2.ropensci.org/fe94320a7481ed96c583af1d989be0418089ba939e977cd7f47112191dcb5ccd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/29882272589"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.1",
      "date": "2026-07-22T01:18:56.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
      "fileid": "https://r2.ropensci.org/a48130a3092e34f24a7280b68bb0e63e3d4270e5a372c2b02be02f1a0c162a96",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/29882272589"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.4.1",
      "date": "2026-07-22T01:18:31.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
      "fileid": "https://r2.ropensci.org/8382230f8bc19796b823c6ce6c3608d9598fdc937c7c153d70d71eb9ea6a5b34",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/29882272589"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.4.1",
      "date": "2026-07-22T01:18:53.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
      "fileid": "https://r2.ropensci.org/89b1ca47edaf567387314c947dc9ce17803217bcb8c5257f3ef3253c5902ecde",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/29882272589"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.4.1",
      "date": "2026-07-22T01:18:54.000Z",
      "arch": "emscripten",
      "commit": "936100fa3099fd1ab535c7ef85e221d2e3b6fd84",
      "fileid": "https://r2.ropensci.org/a160761e546d5921e3ebfdde9faf95fc50890e078e77d99e44e488e5a12de422",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/29882272589"
    }
  ]
}