Package: ksrlive 1.0
Westa Domanova
ksrlive: Identify Kinase Substrate Relationships Using Dynamic Data
Using this package you can combine known kinase substrate relationships with experimental data and determine active kinases and their substrates.
Authors:
ksrlive_1.0.tar.gz
ksrlive_1.0.zip(r-4.7-any)ksrlive_1.0.zip(r-4.6-any)
ksrlive_1.0.tar.gz(r-4.7-any)ksrlive_1.0.tar.gz(r-4.6-any)
ksrlive_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ksrlive/json (API)
| # Install 'ksrlive' in R: |
| install.packages('ksrlive', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- data_kin - Time course data for phosphorylation sites
- phosphonetwork_df - Site specific kinase substrate relationship dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:7f620eb736. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 146 | ||
| source / vignettes | OK | 153 | ||
| linux-release | OK | 110 | ||
| windows-devel | OK | 56 | ||
| windows-release | OK | 68 | ||
| wasm-release | OK | 103 |
Exports:clust.expandclusteringKSR.listrandom.data
Dependencies:tightClust
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Find clusters containing core substrates | clust.expand |
| Return clustering assignments produced by tight.clust | clustering |
| Time course data for phosphorylation sites | data_kin |
| Create a kinase substrate relationship list from a data frame | KSR.list |
| Identify site specific kinase substrate relationships using dynamic data. | ksrlive-package ksrlive |
| site specific kinase substrate relationship dataset | phosphonetwork_df |
| Create random data | random.data |