Package: ksrlive 1.0
Westa Domanova
ksrlive: Identify Kinase Substrate Relationships Using Dynamic Data
Using this package you can combine known kinase substrate relationships with experimental data and determine active kinases and their substrates.
Authors:
ksrlive_1.0.tar.gz
ksrlive_1.0.tar.gz(r-4.5-noble)ksrlive_1.0.tar.gz(r-4.4-noble)
ksrlive_1.0.tgz(r-4.4-emscripten)ksrlive_1.0.tgz(r-4.3-emscripten)
ksrlive.pdf |ksrlive.html✨
ksrlive/json (API)
| # Install 'ksrlive' in R: |
| install.packages('ksrlive', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- data_kin - Time course data for phosphorylation sites
- phosphonetwork_df - Site specific kinase substrate relationship dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:7f620eb736. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
Exports:clust.expandclusteringKSR.listrandom.data
Dependencies:tightClust
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Find clusters containing core substrates | clust.expand |
| Return clustering assignments produced by tight.clust | clustering |
| Time course data for phosphorylation sites | data_kin |
| Create a kinase substrate relationship list from a data frame | KSR.list |
| Identify site specific kinase substrate relationships using dynamic data. | ksrlive-package ksrlive |
| site specific kinase substrate relationship dataset | phosphonetwork_df |
| Create random data | random.data |