{
  "_id": "6ab6439b99f7aa8c6aa2ceed",
  "Package": "ksrlive",
  "Type": "Package",
  "Title": "Identify Kinase Substrate Relationships Using Dynamic Data",
  "Version": "1.0",
  "Date": "2015-10-13",
  "Author": "Westa Domanova",
  "Maintainer": "Westa Domanova <w.domanova@gmail.com>",
  "Description": "Using this package you can combine known kinase substrate\nrelationships with experimental data and determine active\nkinases and their substrates.",
  "License": "GPL-2 | GPL-3",
  "RoxygenNote": "4.1.1.9001",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-25 09:46:11 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2015-10-19 08:41:56 UTC",
  "RemoteUrl": "https://github.com/cran/ksrlive",
  "RemoteRef": "HEAD",
  "RemoteSha": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
  "_user": "cran",
  "_type": "src",
  "_file": "ksrlive_1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/ac1e9589baf3279b5f1accb8374f4ee252fe4085b21f7edd561dcc14176915ef",
  "_filesize": 1413016,
  "_sha256": "ac1e9589baf3279b5f1accb8374f4ee252fe4085b21f7edd561dcc14176915ef",
  "_expires": "2027-01-03T09:49:13.000Z",
  "_created": "2026-09-25T09:46:11.000Z",
  "_published": "2026-09-25T09:49:15.519Z",
  "_jobs": [
    {
      "job": 108023979353,
      "time": 146,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10857540594"
    },
    {
      "job": 108023979360,
      "time": 110,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10857435633"
    },
    {
      "job": 108023202486,
      "time": 153,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10857410385"
    },
    {
      "job": 108023979238,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10856967034"
    },
    {
      "job": 108023979212,
      "time": 56,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10857116198"
    },
    {
      "job": 108023979244,
      "time": 68,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10857265043"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/36120014327",
  "_status": "success",
  "_upstream": "https://github.com/cran/ksrlive",
  "_commit": {
    "id": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
    "author": "Westa Domanova <w.domanova@gmail.com>",
    "committer": "Gabor Csardi <csardi.gabor@gmail.com>",
    "message": "version 1.0\n",
    "time": 1445244116
  },
  "_maintainer": {
    "name": "Westa Domanova",
    "email": "w.domanova@gmail.com"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "tightClust",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 630,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 187,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ksrlive"
  },
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ksrlive.html",
    "extra/manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2015-10-19"
    }
  ],
  "_exports": [
    "clust.expand",
    "clustering",
    "KSR.list",
    "random.data"
  ],
  "_datasets": [
    {
      "name": "data_kin",
      "title": "Time course data for phosphorylation sites",
      "object": "datakin",
      "file": "datakin.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "0_scaled",
        "15s_scaled",
        "30s_scaled",
        "1min_scaled",
        "2min_scaled",
        "5min_scaled",
        "10min_scaled",
        "20min_scaled",
        "60min_scaled",
        "SUB_IDENT"
      ],
      "rows": 84,
      "table": true,
      "tojson": true
    },
    {
      "name": "phosphonetwork_df",
      "title": "site specific kinase substrate relationship dataset",
      "object": "phosphonetworkdf",
      "file": "phosphonetworkdf.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "SUB_ACC_ID",
        "MODSITE_SEQ",
        "KIN_ACC_ID",
        "ORG",
        "KINASE",
        "KIN_GENE_SYMB",
        "HU_CHR_LOC",
        "SUBSTRATE",
        "SUB_GENE_ID",
        "SUB_GENE_SYMB",
        "SUB_MOD_RSD",
        "SITE_GRP_ID",
        "IN_VIVO_RXN",
        "IN_VITRO_RXN",
        "CST_CAT.",
        "PhosphositePLUS",
        "SEQ",
        "PhosphoELM",
        "SwissProt",
        "PubMed",
        "KIN_GENE_ID",
        "HPRD",
        "PhosphoPoint",
        "SUB_HPRD_ID",
        "SUB_HPRDISO_ID",
        "KIN_HPRD_ID",
        "SUB_ACC_ID.human",
        "Position",
        "MODSITE_SEQ.human",
        "MODSITE_SEQ.mouse",
        "SUB_ACC_ID.mouse",
        "KIN_ACC_ID.human",
        "KIN_GENE_SYMB.human",
        "SUB_IDENT"
      ],
      "rows": 13505,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "clust.expand",
      "title": "Find clusters containing core substrates",
      "topics": [
        "clust.expand"
      ]
    },
    {
      "page": "clustering",
      "title": "Return clustering assignments produced by tight.clust",
      "topics": [
        "clustering"
      ]
    },
    {
      "page": "data_kin",
      "title": "Time course data for phosphorylation sites",
      "topics": [
        "data_kin"
      ]
    },
    {
      "page": "KSR.list",
      "title": "Create a kinase substrate relationship list from a data frame",
      "topics": [
        "KSR.list"
      ]
    },
    {
      "page": "ksrlive",
      "title": "Identify site specific kinase substrate relationships using dynamic data.",
      "topics": [
        "ksrlive-package",
        "ksrlive"
      ]
    },
    {
      "page": "phosphonetwork_df",
      "title": "site specific kinase substrate relationship dataset",
      "topics": [
        "phosphonetwork_df"
      ]
    },
    {
      "page": "random.data",
      "title": "Create random data",
      "topics": [
        "random.data"
      ]
    }
  ],
  "_rundeps": [
    "tightClust"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "ksrlive",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0",
      "date": "2026-09-25T09:48:40.000Z",
      "distro": "resolute",
      "commit": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
      "fileid": "https://r2.ropensci.org/8ce49cc5d52ac140cdc5a1d75d3f8a8ba43b6751390a32ca705c751408d94d1a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36120014327"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0",
      "date": "2026-09-25T09:48:04.000Z",
      "distro": "resolute",
      "commit": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
      "fileid": "https://r2.ropensci.org/cf1f4766b3df91e3efa0d5144f19ac556522c9f49899e5b09d7f957815698d9c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36120014327"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0",
      "date": "2026-09-25T09:48:06.000Z",
      "commit": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
      "fileid": "https://r2.ropensci.org/3aa431bb2b97d96c9116ee676ce9a36ca661dcfb907e3a8189ed108bf07197b7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36120014327"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0",
      "date": "2026-09-25T09:47:04.000Z",
      "commit": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
      "fileid": "https://r2.ropensci.org/2e75a3a81a56e5044134387c795a52925a74956388ceedfe44869dd14c491df0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36120014327"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0",
      "date": "2026-09-25T09:47:11.000Z",
      "commit": "7f620eb7369dd9c3bca499dc1b2374ed67d4caea",
      "fileid": "https://r2.ropensci.org/d3aade43be078d8cc93a818a0cab296ba3f98c27468d08bb5e410f76b497c220",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36120014327"
    }
  ]
}