Package: ipsecr 1.4.1
Murray Efford
ipsecr: Spatially Explicit Capture-Recapture by Inverse Prediction
Estimates the density of a spatially distributed animal population sampled with an array of passive detectors, such as traps. Models incorporating distance-dependent detection are fitted by simulation and inverse prediction as proposed by Efford (2004) <doi:10.1111/j.0030-1299.2004.13043.x>.
Authors:
ipsecr_1.4.1.tar.gz
ipsecr_1.4.1.tar.gz(r-4.5-noble)ipsecr_1.4.1.tar.gz(r-4.4-noble)
ipsecr_1.4.1.tgz(r-4.4-emscripten)ipsecr_1.4.1.tgz(r-4.3-emscripten)
ipsecr.pdf |ipsecr.html✨
ipsecr/json (API)
NEWS
| # Install 'ipsecr' in R: |
| install.packages('ipsecr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/murrayefford/ipsecr/issues
- ipsecrdemo - SECR Model Fitted to Demonstration Data
Last updated 9 months agofrom:e7d535b2b2. Checks:OK: 1 WARNING: 1. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 13 2024 |
| R-4.5-linux-x86_64 | WARNING | Oct 13 2024 |
Exports:detectionDesignDataipsecr.fitplot3D.IPplotProxyproxy.msproxyfn0proxyfn1rpsvrpsvisimCHsimpop
Dependencies:abindBHclassclassIntcliDBIe1071glueKernSmoothlatticelifecyclemagrittrMASSMatrixmgcvmvtnormnlmeproxyrasterRcppRcppArmadilloRcppEigenRcppNumericalRcppParallelrlangs2secrsfspstringistringrterraunitsvctrswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Spatially Explicit Capture-Recapture by Inverse Prediction | ipsecr-package ipsecr |
| Detail Specification for ipsecr.fit | details fixedbeta param |
| Internal Functions | detectionDesignData proxy.ms proxyfn1 rpsv rpsvi simCH simpop |
| Defunct Functions in Package 'ipsecr' | ipsecr-defunct proxyfn0 |
| Deprecated Functions in Package 'ipsecr' | ipsecr-deprecated |
| Spatially Explicit Capture-Recapture by Inverse Prediction | ipsecr.fit |
| SECR Model Fitted to Demonstration Data | ipsecrdemo |
| Create Default Design Data | makeNewData.ipsecr newdata |
| Plot Detection Functions | plot.ipsecr |
| Plot design and saved simulations for one box from a model fitted with 'ipsecr.fit' | plot3D.IP |
| Simulate and plot the relationship between a parameter and its designated proxy | plotProxy |
| SECR Model Predictions | predict.ipsecr |
| Print or Summarise ipsecr Object | print.ipsecr summary.ipsecr |
| Variance - Covariance Matrix of SECR Parameters | vcov.ipsecr |
