{ "_id": "6a2283f6cd65a98ecbd52a59", "Package": "ipsecr", "Type": "Package", "Title": "Spatially Explicit Capture-Recapture by Inverse Prediction", "Version": "1.4.4", "Date": "2025-06-10", "Description": "Estimates the density of a spatially distributed animal\npopulation sampled with an array of passive detectors, such as\ntraps. Models incorporating distance-dependent detection are\nfitted by simulation and inverse prediction as proposed by\nEfford (2004) .", "Authors@R": "person(\"Murray\", \"Efford\", \nemail = \"murray.efford@otago.ac.nz\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0001-5231-5184\"))", "VignetteBuilder": "knitr", "License": "GPL (>= 2)", "LazyData": "yes", "LazyDataCompression": "xz", "URL": "https://github.com/MurrayEfford/ipsecr/,\nhttps://www.otago.ac.nz/density/", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-05 08:01:07 UTC", "User": "root" }, "Author": "Murray Efford [aut, cre] (ORCID:\n)", "Maintainer": "Murray Efford ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-06-10 05:20:02 UTC", "RemoteUrl": "https://github.com/cran/ipsecr", "RemoteRef": "HEAD", "RemoteSha": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "MD5sum": "68c1e4303c89d2893fb576d133e8c379", "_user": "cran", "_type": "src", "_file": "ipsecr_1.4.4.tar.gz", "_fileid": "99a21e326f491f10d15b0ada7cf4a6faea248524b10edca8a6b9d29ba2d7c1a2", "_filesize": 2768974, "_sha256": "99a21e326f491f10d15b0ada7cf4a6faea248524b10edca8a6b9d29ba2d7c1a2", "_created": "2026-06-05T08:01:07.000Z", "_published": "2026-06-05T08:08:22.145Z", "_distro": "noble", "_jobs": [ { "job": 79688206057, "time": 321, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7431814400" }, { "job": 79688206032, "time": 347, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7431820347" }, { "job": 79688205945, "time": 330, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7431812494" }, { "job": 79688206051, "time": 320, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7431813214" }, { "job": 79687373919, "time": 344, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7431718603" }, { "job": 79688205921, "time": 198, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7431776793" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27002893222", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/ipsecr", "_commit": { "id": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "author": "Murray Efford ", "committer": "cran-robot ", "message": "version 1.4.4\n", "time": 1749532802 }, "_maintainer": { "name": "Murray Efford", "email": "murray.efford@otago.ac.nz", "login": "murrayefford", "description": "", "uuid": 8920894, "orcid": "0000-0001-5231-5184" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "secr", "version": ">= 4.5.8", "role": "Depends" }, { "package": "BH", "role": "LinkingTo" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "nlme", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "Rcpp", "version": ">= 1.0.8.3", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "FrF2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "plot3D", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "sf", "role": "Suggests" }, { "package": "spatstat", "role": "Suggests" }, { "package": "testthat", "version": ">= 0.11.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-24", "n": 1 } ], "_tags": [ { "name": "1.4.4", "date": "2025-06-10" } ], "_stars": 0, "_contributors": [ { "user": "murrayefford", "count": 8, "uuid": 8920894 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 152, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ipsecr" }, "_devurl": "https://github.com/murrayefford/ipsecr", "_searchresults": 7, "_topics": [ "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ipsecr.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/murrayefford/ipsecr", "_realowner": "murrayefford", "_cranurl": false, "_releases": [ { "version": "1.1.1", "date": "2022-06-20" }, { "version": "1.1.2", "date": "2022-06-26" }, { "version": "1.2.0", "date": "2022-08-29" }, { "version": "1.3.0", "date": "2022-09-09" }, { "version": "1.4.0", "date": "2023-01-14" }, { "version": "1.4.1", "date": "2024-01-15" }, { "version": "1.4.2", "date": "2025-01-24" }, { "version": "1.4.4", "date": "2025-06-10" } ], "_exports": [ "detectionDesignData", "ipsecr.fit", "plot3D.IP", "plotProxy", "proxy.ms", "proxyfn0", "proxyfn1", "rpsv", "rpsvi", "simCH", "simpop" ], "_datasets": [ { "name": "ipsecrdemo", "title": "SECR Model Fitted to Demonstration Data", "object": "ipsecrdemo", "class": [ "ipsecr" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "ipsecr-package", "title": "Spatially Explicit Capture-Recapture by Inverse Prediction", "topics": [ "ipsecr-package", "ipsecr" ] }, { "page": "details", "title": "Detail Specification for ipsecr.fit", "topics": [ "details", "fixedbeta", "param" ] }, { "page": "ipsecr-internal", "title": "Internal Functions", "topics": [ "detectionDesignData", "proxy.ms", "proxyfn1", "rpsv", "rpsvi", "simCH", "simpop" ] }, { "page": "ipsecr-defunct", "title": "Defunct Functions in Package 'ipsecr'", "topics": [ "ipsecr-defunct", "proxyfn0" ] }, { "page": "ipsecr-deprecated", "title": "Deprecated Functions in Package 'ipsecr'", "topics": [ "ipsecr-deprecated" ] }, { "page": "ipsecr.fit", "title": "Spatially Explicit Capture-Recapture by Inverse Prediction", "topics": [ "ipsecr.fit" ] }, { "page": "ipsecrdemo", "title": "SECR Model Fitted to Demonstration Data", "topics": [ "ipsecrdemo" ] }, { "page": "makeNewdata.ipsecr", "title": "Create Default Design Data", "topics": [ "makeNewData.ipsecr", "newdata" ] }, { "page": "plot.ipsecr", "title": "Plot Detection Functions", "topics": [ "plot.ipsecr" ] }, { "page": "plot3D.IP", "title": "Plot design and saved simulations for one box from a model fitted with 'ipsecr.fit'", "topics": [ "plot3D.IP" ] }, { "page": "plotProxy", "title": "Simulate and plot the relationship between a parameter and its designated proxy", "topics": [ "plotProxy" ] }, { "page": "predict.ipsecr", "title": "SECR Model Predictions", "topics": [ "predict.ipsecr" ] }, { "page": "print.ipsecr", "title": "Print, Trim or Summarise ipsecr Object", "topics": [ "print.ipsecr", "summary.ipsecr", "trim.ipsecr" ] }, { "page": "vcov.ipsecr", "title": "Variance - Covariance Matrix of SECR Parameters", "topics": [ "vcov.ipsecr" ] } ], "_rundeps": [ "abind", "BH", "class", "classInt", "cli", "DBI", "e1071", "glue", "KernSmooth", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "mgcv", "mvtnorm", "nlme", "proxy", "raster", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppNumerical", "RcppParallel", "rlang", "s2", "secr", "secrfunc", "sf", "sp", "stringi", "stringr", "terra", "units", "vctrs", "wk" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "ipsecr-vignette.Rmd", "filename": "ipsecr-vignette.html", "title": "ipsecr 1.4 - spatially explicit capture--recapture by inverse prediction", "author": "Murray Efford", "engine": "knitr::rmarkdown", "headings": [ "Inverse prediction for capture--recapture estimation", "Simple example", "Proxy functions", "Multi-session models", "Fitting a density gradient", "Non-target interference", "Conditioning to minimise the effect of ghost individuals", "Tuning the algorithm", "Fractional designs", "Models with extra parameters", "Relationship to package secr", "Troubleshooting and limitations", "Sparse data", "\"simulations for box 1 did not reach target for proxy SE 0.002 \"", "\"solution not found after 5 attempts\"", "References" ], "created": "2022-06-20 07:20:06", "modified": "2025-06-10 05:20:02", "commits": 6 } ], "_score": 2, "_indexed": false, "_nocasepkg": "ipsecr", "_universes": [ "cran" ], "_indexurl": "https://murrayefford.r-universe.dev/ipsecr", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.4.4", "date": "2026-06-05T08:04:38.000Z", "distro": "noble", "arch": "aarch64", "commit": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "fileid": "1b29e6e297dda114929c9487a86871d8b1ce3656f4653221d2e1eb9c1945e622", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/cran/actions/runs/27002893222" }, { "r": "4.7.0", "os": "linux", "version": "1.4.4", "date": "2026-06-05T08:04:33.000Z", "distro": "noble", "arch": "x86_64", "commit": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "fileid": "379b54735295c92652dc578ac63817c288c04b749543e9297dff2c8a2fefa187", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/cran/actions/runs/27002893222" }, { "r": "4.6.0", "os": "linux", "version": "1.4.4", "date": "2026-06-05T08:04:35.000Z", "distro": "noble", "arch": "aarch64", "commit": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "fileid": "75b5da413aed2fb9281534b6f0ebd7c22f7aeb165c125c24b8bcfcdc73336eed", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/cran/actions/runs/27002893222" }, { "r": "4.6.0", "os": "linux", "version": "1.4.4", "date": "2026-06-05T08:04:28.000Z", "distro": "noble", "arch": "x86_64", "commit": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "fileid": "6c90c51d8f93e84bd7b12baa631269e0794ea49bc6ac4c5a9098c2421d329059", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/cran/actions/runs/27002893222" }, { "r": "4.6.0", "os": "wasm", "version": "1.4.4", "date": "2026-06-05T08:05:01.000Z", "arch": "emscripten", "commit": "c31e8a33a8b11a9a8d6d927ddbdfdcb408818565", "fileid": "19d2aa8136f261ee923847dded53e2e8d3558c7c3b100b16134452f10196c2a9", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27002893222" } ] }