Package: hsphase 2.0.3

Mohammad Ferdosi

hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Authors:Mohammad Ferdosi <[email protected]>, Cedric Gondro <[email protected]>

hsphase_2.0.3.tar.gz
hsphase_2.0.3.tar.gz(r-4.5-noble)hsphase_2.0.3.tar.gz(r-4.4-noble)
hsphase_2.0.3.tgz(r-4.4-emscripten)hsphase_2.0.3.tgz(r-4.3-emscripten)
hsphase.pdf |hsphase.html✨
hsphase/json (API)

# Install 'hsphase' in R:
install.packages('hsphase', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • genotypes - Example of Genotype Data Set
  • map - Example Map File for Genetic Data
  • pedigree - Example Pedigree Data Set

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cppopenmp

3.32 score 1 stars 1 packages 341 downloads 7 mentions 25 exports 4 dependencies

Last updated 1 years agofrom:529b90d671. Checks:1 ERROR, 2 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILMar 13 2025
R-4.5-linux-x86_64OKMar 13 2025
R-4.4-linux-x86_64OKMar 13 2025

Exports:.fastdist.maf.simulateHalfsibaiobmhcocshbphhhssimageplotimputeohdohgohplotparapedigreeNamingphfpmpogcreadGenotyperecombinationsrplotrpohssp

Dependencies:RcppRcppArmadillosnowsnowfall

A brief vignette to illustrate the usage of the main functions of hsphase

Rendered fromhsphase.Rnwusingutils::Sweaveon Mar 13 2025.

Last update: 2014-06-07
Started: 2013-05-25