{
  "_id": "6a1eff23b401979e7341a932",
  "Package": "hsphase",
  "Type": "Package",
  "Title": "Phasing, Pedigree Reconstruction, Sire Imputation and\nRecombination Events Identification of Half-sib Families Using\nSNP Data",
  "Version": "3.0.0",
  "Date": "2026-2-15",
  "Authors@R": "c(person(\"Mohammad\", \"Ferdosi\", email = \"mhferdosi@yahoo.com\", role = c(\"aut\", \"cre\")),\nperson(\"Cedric\", \"Gondro\", email = \"gondroce@msu.edu\", role = \"aut\"))",
  "Description": "Identification of recombination events, haplotype\nreconstruction, sire imputation and pedigree reconstruction\nusing half-sib family SNP data.",
  "License": "GPL-3",
  "NeedsCompilation": "yes",
  "RoxygenNote": "7.3.3",
  "Packaged": {
    "Date": "2026-05-18 09:25:42 UTC",
    "User": "root"
  },
  "Author": "Mohammad Ferdosi [aut, cre], Cedric Gondro [aut]",
  "Maintainer": "Mohammad Ferdosi <mhferdosi@yahoo.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-02-17 10:50:02 UTC",
  "RemoteUrl": "https://github.com/cran/hsphase",
  "RemoteRef": "HEAD",
  "RemoteSha": "64a2493906812bf2065d2e590419c9a3511ec233",
  "MD5sum": "2b5550a6f226beff09522d0b2e84f4dc",
  "_user": "cran",
  "_type": "src",
  "_file": "hsphase_3.0.0.tar.gz",
  "_fileid": "d31e78c22a0300faa1795fdb584059bbcf96dd452c63f77098e27961ff204afa",
  "_filesize": 1010864,
  "_sha256": "d31e78c22a0300faa1795fdb584059bbcf96dd452c63f77098e27961ff204afa",
  "_created": "2026-05-18T09:25:42.000Z",
  "_published": "2026-06-02T16:04:51.723Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79115653337,
      "time": 169,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7054169292"
    },
    {
      "job": 79115653426,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7054163373"
    },
    {
      "job": 79115654021,
      "time": 155,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7054164138"
    },
    {
      "job": 79115653553,
      "time": 165,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7054168135"
    },
    {
      "job": 79115652184,
      "time": 304,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7054108585"
    },
    {
      "job": 79115652204,
      "time": 170,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7363187024"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26024589579",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/hsphase",
  "_commit": {
    "id": "64a2493906812bf2065d2e590419c9a3511ec233",
    "author": "Mohammad Ferdosi <mhferdosi@yahoo.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 3.0.0\n",
    "time": 1771325402
  },
  "_maintainer": {
    "name": "Mohammad Ferdosi",
    "email": "mhferdosi@yahoo.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "snowfall",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "RcppArmadillo",
      "version": ">= 0.4.300.8.0",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.11.2",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "gdata",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2026-08",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "3.0.0",
      "date": "2026-02-17"
    }
  ],
  "_stars": 1,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 291,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hsphase"
  },
  "_mentions": 7,
  "_searchresults": 29,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hsphase.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.2.3",
      "date": "2013-10-26"
    },
    {
      "version": "1.2.4",
      "date": "2013-10-30"
    },
    {
      "version": "1.2.5",
      "date": "2014-03-28"
    },
    {
      "version": "1.2.6",
      "date": "2014-04-02"
    },
    {
      "version": "2.0.0",
      "date": "2014-06-27"
    },
    {
      "version": "2.0.1",
      "date": "2015-01-10"
    },
    {
      "version": "2.0.2",
      "date": "2018-11-26"
    },
    {
      "version": "2.0.3",
      "date": "2024-02-16"
    },
    {
      "version": "2.0.4",
      "date": "2025-04-06"
    },
    {
      "version": "3.0.0",
      "date": "2026-02-17"
    }
  ],
  "_exports": [
    ".fastdist",
    ".fillGap",
    ".fixBothStrand",
    ".fixRotation",
    ".hblock",
    ".ibdCluster",
    ".maf",
    ".o2tH",
    ".phfnoGenotype",
    ".prCalus",
    ".prManual",
    ".prSimple",
    ".rpohhsphase",
    ".simulateHalfsib",
    "addSwitch",
    "aio",
    "bmh",
    "co",
    "cs",
    "fixSW",
    "groupMatSingle",
    "hbp",
    "hh",
    "hss",
    "imageplot",
    "impute",
    "ohd",
    "ohg",
    "ohplot",
    "para",
    "pedigreeNaming",
    "phf",
    "pm",
    "pogc",
    "readGenotype",
    "recombinations",
    "rplot",
    "rpoh",
    "ssp",
    "switchDetector"
  ],
  "_datasets": [
    {
      "name": "genotypes",
      "title": "Example Genotype Data Set",
      "object": "genotypes",
      "file": "genotypes.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "M1",
        "M2",
        "M3",
        "M4",
        "M5",
        "M6",
        "M7",
        "M8",
        "M9",
        "M10",
        "M11",
        "M12",
        "M13",
        "M14",
        "M15",
        "M16",
        "M17",
        "M18",
        "M19",
        "M20",
        "M21",
        "M22",
        "M23",
        "M24",
        "M25",
        "M26",
        "M27",
        "M28",
        "M29",
        "M30",
        "M31",
        "M32",
        "M33",
        "M34",
        "M35",
        "M36",
        "M37",
        "M38",
        "M39",
        "M40",
        "M41",
        "M42",
        "M43",
        "M44",
        "M45",
        "M46",
        "M47",
        "M48",
        "M49",
        "M50",
        "M51",
        "M52",
        "M53",
        "M54",
        "M55",
        "M56",
        "M57",
        "M58",
        "M59",
        "M60",
        "M61",
        "M62",
        "M63",
        "M64",
        "M65",
        "M66",
        "M67",
        "M68",
        "M69",
        "M70",
        "M71",
        "M72",
        "M73",
        "M74",
        "M75",
        "M76",
        "M77",
        "M78",
        "M79",
        "M80",
        "M81",
        "M82",
        "M83",
        "M84",
        "M85",
        "M86",
        "M87",
        "M88",
        "M89",
        "M90",
        "M91",
        "M92",
        "M93",
        "M94",
        "M95",
        "M96",
        "M97",
        "M98",
        "M99",
        "M100",
        "M101",
        "M102",
        "M103",
        "M104",
        "M105",
        "M106",
        "M107",
        "M108",
        "M109",
        "M110",
        "M111",
        "M112",
        "M113",
        "M114",
        "M115",
        "M116",
        "M117",
        "M118",
        "M119",
        "M120",
        "M121",
        "M122",
        "M123",
        "M124",
        "M125",
        "M126",
        "M127",
        "M128",
        "M129",
        "M130",
        "M131",
        "M132",
        "M133",
        "M134",
        "M135",
        "M136",
        "M137",
        "M138",
        "M139",
        "M140",
        "M141",
        "M142",
        "M143",
        "M144",
        "M145",
        "M146",
        "M147",
        "M148",
        "M149",
        "M150",
        "M151",
        "M152",
        "M153",
        "M154",
        "M155",
        "M156",
        "M157",
        "M158",
        "M159",
        "M160",
        "M161",
        "M162",
        "M163",
        "M164",
        "M165",
        "M166",
        "M167",
        "M168",
        "M169",
        "M170",
        "M171",
        "M172",
        "M173",
        "M174",
        "M175",
        "M176",
        "M177",
        "M178",
        "M179",
        "M180",
        "M181",
        "M182",
        "M183",
        "M184",
        "M185",
        "M186",
        "M187",
        "M188",
        "M189",
        "M190",
        "M191",
        "M192",
        "M193",
        "M194",
        "M195",
        "M196",
        "M197",
        "M198",
        "M199",
        "M200",
        "M201",
        "M202",
        "M203",
        "M204",
        "M205",
        "M206",
        "M207",
        "M208",
        "M209",
        "M210",
        "M211",
        "M212",
        "M213",
        "M214",
        "M215",
        "M216",
        "M217",
        "M218",
        "M219",
        "M220",
        "M221",
        "M222",
        "M223",
        "M224",
        "M225",
        "M226",
        "M227",
        "M228",
        "M229",
        "M230",
        "M231",
        "M232",
        "M233",
        "M234",
        "M235",
        "M236",
        "M237",
        "M238",
        "M239",
        "M240",
        "M241",
        "M242",
        "M243",
        "M244",
        "M245",
        "M246",
        "M247",
        "M248",
        "M249",
        "M250",
        "M251",
        "M252",
        "M253",
        "M254",
        "M255",
        "M256",
        "M257",
        "M258",
        "M259",
        "M260",
        "M261",
        "M262",
        "M263",
        "M264",
        "M265",
        "M266",
        "M267",
        "M268",
        "M269",
        "M270",
        "M271",
        "M272",
        "M273",
        "M274",
        "M275",
        "M276",
        "M277",
        "M278",
        "M279",
        "M280",
        "M281",
        "M282",
        "M283",
        "M284",
        "M285",
        "M286",
        "M287",
        "M288",
        "M289",
        "M290",
        "M291",
        "M292",
        "M293",
        "M294",
        "M295",
        "M296",
        "M297",
        "M298",
        "M299",
        "M300",
        "M301",
        "M302",
        "M303",
        "M304",
        "M305",
        "M306",
        "M307",
        "M308",
        "M309",
        "M310",
        "M311",
        "M312",
        "M313",
        "M314",
        "M315",
        "M316",
        "M317",
        "M318",
        "M319",
        "M320",
        "M321",
        "M322",
        "M323",
        "M324",
        "M325",
        "M326",
        "M327",
        "M328",
        "M329",
        "M330",
        "M331",
        "M332",
        "M333",
        "M334",
        "M335",
        "M336",
        "M337",
        "M338",
        "M339",
        "M340",
        "M341",
        "M342",
        "M343",
        "M344",
        "M345",
        "M346",
        "M347",
        "M348",
        "M349",
        "M350",
        "M351",
        "M352",
        "M353",
        "M354",
        "M355",
        "M356",
        "M357",
        "M358",
        "M359",
        "M360",
        "M361",
        "M362",
        "M363",
        "M364",
        "M365",
        "M366",
        "M367",
        "M368",
        "M369",
        "M370",
        "M371",
        "M372",
        "M373",
        "M374",
        "M375",
        "M376",
        "M377",
        "M378",
        "M379",
        "M380",
        "M381",
        "M382",
        "M383",
        "M384",
        "M385",
        "M386",
        "M387",
        "M388",
        "M389",
        "M390",
        "M391",
        "M392",
        "M393",
        "M394",
        "M395",
        "M396",
        "M397",
        "M398",
        "M399",
        "M400",
        "M401",
        "M402",
        "M403",
        "M404",
        "M405",
        "M406",
        "M407",
        "M408",
        "M409",
        "M410",
        "M411",
        "M412",
        "M413",
        "M414",
        "M415",
        "M416",
        "M417",
        "M418",
        "M419",
        "M420",
        "M421",
        "M422",
        "M423",
        "M424",
        "M425",
        "M426",
        "M427",
        "M428",
        "M429",
        "M430",
        "M431",
        "M432",
        "M433",
        "M434",
        "M435",
        "M436",
        "M437",
        "M438",
        "M439",
        "M440",
        "M441",
        "M442",
        "M443",
        "M444",
        "M445",
        "M446",
        "M447",
        "M448",
        "M449",
        "M450",
        "M451",
        "M452",
        "M453",
        "M454",
        "M455",
        "M456",
        "M457",
        "M458",
        "M459",
        "M460",
        "M461",
        "M462",
        "M463",
        "M464",
        "M465",
        "M466",
        "M467",
        "M468",
        "M469",
        "M470",
        "M471",
        "M472",
        "M473",
        "M474",
        "M475",
        "M476",
        "M477",
        "M478",
        "M479",
        "M480",
        "M481",
        "M482",
        "M483",
        "M484",
        "M485",
        "M486",
        "M487",
        "M488",
        "M489",
        "M490",
        "M491",
        "M492",
        "M493",
        "M494",
        "M495",
        "M496",
        "M497",
        "M498",
        "M499",
        "M500",
        "M501",
        "M502",
        "M503",
        "M504",
        "M505",
        "M506",
        "M507",
        "M508",
        "M509",
        "M510",
        "M511",
        "M512",
        "M513",
        "M514",
        "M515",
        "M516",
        "M517",
        "M518",
        "M519",
        "M520",
        "M521",
        "M522",
        "M523",
        "M524",
        "M525",
        "M526",
        "M527",
        "M528",
        "M529",
        "M530",
        "M531",
        "M532",
        "M533",
        "M534",
        "M535",
        "M536",
        "M537",
        "M538",
        "M539",
        "M540",
        "M541",
        "M542",
        "M543",
        "M544",
        "M545",
        "M546",
        "M547",
        "M548",
        "M549",
        "M550",
        "M551",
        "M552",
        "M553",
        "M554",
        "M555",
        "M556",
        "M557",
        "M558",
        "M559",
        "M560",
        "M561",
        "M562",
        "M563",
        "M564",
        "M565",
        "M566",
        "M567",
        "M568",
        "M569",
        "M570",
        "M571",
        "M572",
        "M573",
        "M574",
        "M575",
        "M576",
        "M577",
        "M578",
        "M579",
        "M580",
        "M581",
        "M582",
        "M583",
        "M584",
        "M585",
        "M586",
        "M587",
        "M588",
        "M589",
        "M590",
        "M591",
        "M592",
        "M593",
        "M594",
        "M595",
        "Q1",
        "M596",
        "M597",
        "M598",
        "M599",
        "M600",
        "M601",
        "M602",
        "M603",
        "M604",
        "M605",
        "M606",
        "M607",
        "M608",
        "M609",
        "M610",
        "M611",
        "M612",
        "M613",
        "M614",
        "M615",
        "M616",
        "M617",
        "M618",
        "M619",
        "M620",
        "M621",
        "M622",
        "M623",
        "M624",
        "M625",
        "M626",
        "M627",
        "M628",
        "M629",
        "M630",
        "M631",
        "M632",
        "M633",
        "M634",
        "M635",
        "M636",
        "M637",
        "M638",
        "M639",
        "M640",
        "M641",
        "M642",
        "M643",
        "M644",
        "M645",
        "M646",
        "M647",
        "M648",
        "M649",
        "M650",
        "M651",
        "M652",
        "M653",
        "M654",
        "M655",
        "M656",
        "M657",
        "M658",
        "M659",
        "M660",
        "M661",
        "M662",
        "M663",
        "M664",
        "M665",
        "M666",
        "M667",
        "M668",
        "M669",
        "M670",
        "M671",
        "M672",
        "M673",
        "M674",
        "M675",
        "M676",
        "M677",
        "M678",
        "M679",
        "M680",
        "M681",
        "M682",
        "M683",
        "M684",
        "M685",
        "M686",
        "M687",
        "M688",
        "M689",
        "M690",
        "M691",
        "M692",
        "M693",
        "M694",
        "M695",
        "M696",
        "M697",
        "M698",
        "M699",
        "M700",
        "M701",
        "M702",
        "M703",
        "M704",
        "M705",
        "M706",
        "M707",
        "M708",
        "M709",
        "M710",
        "M711",
        "M712",
        "M713",
        "M714",
        "M715",
        "M716",
        "M717",
        "M718",
        "M719",
        "M720",
        "M721",
        "M722",
        "M723",
        "M724",
        "M725",
        "M726",
        "M727",
        "M728",
        "M729",
        "M730",
        "M731",
        "M732",
        "M733",
        "M734",
        "M735",
        "M736",
        "M737",
        "M738",
        "M739",
        "M740",
        "M741",
        "M742",
        "M743",
        "M744",
        "M745",
        "M746",
        "M747",
        "M748",
        "M749",
        "M750",
        "M751",
        "M752",
        "M753",
        "M754",
        "M755",
        "M756",
        "M757",
        "M758",
        "M759",
        "M760",
        "M761",
        "M762",
        "M763",
        "M764",
        "M765",
        "M766",
        "M767",
        "M768",
        "M769",
        "M770",
        "M771",
        "M772",
        "M773",
        "M774",
        "M775",
        "M776",
        "M777",
        "M778",
        "M779",
        "M780",
        "M781",
        "M782",
        "M783",
        "M784",
        "M785",
        "M786",
        "M787",
        "M788",
        "M789",
        "M790",
        "M791",
        "M792",
        "M793",
        "M794",
        "M795",
        "M796",
        "M797",
        "M798",
        "M799",
        "M800",
        "M801",
        "M802",
        "M803",
        "M804",
        "M805",
        "M806",
        "M807",
        "M808",
        "M809",
        "M810",
        "M811",
        "M812",
        "M813",
        "M814",
        "M815",
        "M816",
        "M817",
        "M818",
        "M819",
        "M820",
        "M821",
        "M822",
        "M823",
        "M824",
        "M825",
        "M826",
        "M827",
        "M828",
        "M829",
        "M830",
        "M831",
        "M832",
        "M833",
        "M834",
        "M835",
        "M836",
        "M837",
        "M838",
        "M839",
        "M840",
        "M841",
        "M842",
        "M843",
        "M844",
        "M845",
        "M846",
        "M847",
        "M848",
        "M849",
        "M850",
        "M851",
        "M852",
        "M853",
        "M854",
        "M855",
        "M856",
        "M857",
        "M858",
        "M859",
        "M860",
        "M861",
        "M862",
        "M863",
        "M864",
        "M865",
        "M866",
        "M867",
        "M868",
        "M869",
        "M870",
        "M871",
        "M872",
        "M873",
        "M874",
        "M875",
        "M876",
        "M877",
        "M878",
        "M879",
        "M880",
        "M881",
        "M882",
        "M883",
        "M884",
        "M885",
        "M886",
        "M887",
        "M888",
        "M889",
        "M890",
        "M891",
        "M892",
        "M893",
        "M894",
        "M895",
        "M896",
        "M897",
        "M898",
        "M899",
        "M900",
        "M901",
        "M902",
        "M903",
        "M904",
        "M905",
        "M906",
        "M907",
        "M908",
        "M909",
        "M910",
        "M911",
        "M912",
        "M913",
        "M914",
        "M915",
        "M916",
        "M917",
        "M918",
        "M919",
        "M920",
        "M921",
        "M922",
        "M923",
        "M924",
        "M925",
        "M926",
        "M927",
        "M928",
        "M929",
        "M930",
        "M931",
        "M932",
        "M933",
        "M934",
        "M935",
        "M936",
        "M937",
        "M938",
        "M939",
        "M940",
        "M941",
        "M942",
        "M943",
        "M944",
        "M945",
        "M946",
        "M947",
        "M948",
        "M949",
        "M950",
        "M951",
        "M952",
        "M953",
        "M954",
        "M955",
        "M956",
        "M957",
        "M958",
        "Q2",
        "M959",
        "M960",
        "M961",
        "M962",
        "M963",
        "M964",
        "M965",
        "M966",
        "M967",
        "M968",
        "M969",
        "M970",
        "M971",
        "M972",
        "M973",
        "M974",
        "M975",
        "M976",
        "M977",
        "M978",
        "M979",
        "M980",
        "M981",
        "M982",
        "M983",
        "M984",
        "M985",
        "M986",
        "M987",
        "M988",
        "M989",
        "M990",
        "M991",
        "M992",
        "M993",
        "M994",
        "M995",
        "M996",
        "M997",
        "M998",
        "M999",
        "M1000",
        "M1001",
        "M1002",
        "M1003",
        "M1004",
        "M1005",
        "M1006",
        "M1007",
        "M1008",
        "M1009",
        "M1010",
        "M1011",
        "M1012",
        "M1013",
        "M1014",
        "M1015",
        "M1016",
        "M1017",
        "M1018",
        "M1019",
        "M1020",
        "M1021",
        "M1022",
        "M1023",
        "M1024",
        "M1025",
        "M1026",
        "M1027",
        "M1028",
        "M1029",
        "M1030",
        "M1031",
        "M1032",
        "M1033",
        "M1034",
        "M1035",
        "M1036",
        "M1037",
        "M1038",
        "M1039",
        "M1040",
        "M1041",
        "M1042",
        "M1043",
        "M1044",
        "M1045",
        "M1046",
        "M1047",
        "M1048",
        "M1049",
        "M1050",
        "M1051",
        "M1052",
        "M1053",
        "M1054",
        "M1055",
        "M1056",
        "M1057",
        "M1058",
        "M1059",
        "M1060",
        "M1061",
        "M1062",
        "M1063",
        "M1064",
        "M1065",
        "M1066",
        "M1067",
        "M1068",
        "M1069",
        "M1070",
        "M1071",
        "M1072",
        "M1073",
        "M1074",
        "M1075",
        "M1076",
        "M1077",
        "M1078",
        "M1079",
        "M1080",
        "M1081",
        "M1082",
        "M1083",
        "M1084",
        "M1085",
        "M1086",
        "M1087",
        "M1088",
        "M1089",
        "M1090",
        "M1091",
        "M1092",
        "M1093",
        "M1094",
        "M1095",
        "M1096",
        "M1097",
        "M1098",
        "M1099",
        "M1100",
        "M1101",
        "M1102",
        "M1103",
        "M1104",
        "M1105",
        "M1106",
        "M1107",
        "M1108",
        "M1109",
        "M1110",
        "M1111",
        "M1112",
        "M1113",
        "M1114",
        "M1115",
        "M1116",
        "M1117",
        "M1118",
        "M1119",
        "M1120",
        "M1121",
        "M1122",
        "M1123",
        "M1124",
        "M1125",
        "M1126",
        "M1127",
        "M1128",
        "M1129",
        "M1130",
        "M1131",
        "M1132",
        "M1133",
        "M1134",
        "M1135",
        "M1136",
        "M1137",
        "M1138",
        "M1139",
        "M1140",
        "M1141",
        "M1142",
        "M1143",
        "M1144",
        "M1145",
        "M1146",
        "M1147",
        "M1148",
        "M1149",
        "M1150",
        "M1151",
        "M1152",
        "M1153",
        "M1154",
        "M1155",
        "M1156",
        "M1157",
        "M1158",
        "M1159",
        "M1160",
        "M1161",
        "M1162",
        "M1163",
        "M1164",
        "M1165",
        "M1166",
        "M1167",
        "M1168",
        "M1169",
        "M1170",
        "M1171",
        "M1172",
        "M1173",
        "M1174",
        "M1175",
        "M1176",
        "M1177",
        "M1178",
        "M1179",
        "M1180",
        "M1181",
        "M1182",
        "M1183",
        "M1184",
        "M1185",
        "M1186",
        "M1187",
        "M1188",
        "M1189",
        "M1190",
        "M1191",
        "M1192",
        "M1193",
        "M1194",
        "M1195",
        "M1196",
        "M1197",
        "M1198",
        "M1199",
        "M1200",
        "M1201",
        "M1202",
        "M1203",
        "M1204",
        "M1205",
        "M1206",
        "M1207",
        "M1208",
        "M1209",
        "M1210",
        "M1211",
        "M1212",
        "M1213",
        "M1214",
        "M1215",
        "M1216",
        "M1217",
        "M1218",
        "M1219",
        "M1220",
        "M1221",
        "M1222",
        "M1223",
        "M1224",
        "M1225",
        "M1226",
        "M1227",
        "M1228",
        "M1229",
        "M1230",
        "M1231",
        "M1232",
        "M1233",
        "M1234",
        "M1235",
        "M1236",
        "M1237",
        "M1238",
        "M1239",
        "M1240",
        "M1241",
        "M1242",
        "M1243",
        "M1244",
        "M1245",
        "M1246",
        "M1247",
        "M1248",
        "M1249",
        "M1250",
        "M1251",
        "M1252",
        "M1253",
        "M1254",
        "M1255",
        "M1256",
        "M1257",
        "M1258",
        "M1259",
        "M1260",
        "M1261",
        "M1262",
        "M1263",
        "M1264",
        "M1265",
        "M1266",
        "M1267",
        "M1268",
        "M1269",
        "M1270",
        "M1271",
        "M1272",
        "M1273",
        "M1274",
        "M1275",
        "M1276",
        "M1277",
        "M1278",
        "M1279",
        "M1280",
        "M1281",
        "M1282",
        "M1283",
        "M1284",
        "M1285",
        "M1286",
        "M1287",
        "M1288",
        "M1289",
        "M1290",
        "M1291",
        "M1292",
        "M1293",
        "M1294",
        "M1295",
        "M1296",
        "M1297",
        "M1298",
        "M1299",
        "M1300",
        "M1301",
        "M1302",
        "M1303",
        "M1304",
        "M1305",
        "M1306",
        "M1307",
        "M1308",
        "M1309",
        "M1310",
        "M1311",
        "M1312",
        "M1313",
        "M1314",
        "M1315",
        "M1316",
        "M1317",
        "M1318",
        "M1319",
        "M1320",
        "M1321",
        "M1322",
        "M1323",
        "M1324",
        "M1325",
        "M1326",
        "M1327",
        "M1328",
        "M1329",
        "M1330",
        "M1331",
        "M1332",
        "M1333",
        "M1334",
        "M1335",
        "M1336",
        "M1337",
        "M1338",
        "M1339",
        "M1340",
        "M1341",
        "M1342",
        "M1343",
        "M1344",
        "M1345",
        "M1346",
        "M1347",
        "M1348",
        "M1349",
        "M1350",
        "M1351",
        "M1352",
        "M1353",
        "M1354",
        "M1355",
        "M1356",
        "M1357",
        "M1358",
        "M1359",
        "M1360",
        "M1361",
        "M1362",
        "M1363",
        "M1364",
        "M1365",
        "M1366",
        "M1367",
        "M1368",
        "M1369",
        "M1370",
        "M1371",
        "M1372",
        "M1373",
        "M1374",
        "M1375",
        "M1376",
        "M1377",
        "M1378",
        "M1379",
        "M1380",
        "M1381",
        "M1382",
        "M1383",
        "M1384",
        "M1385",
        "M1386",
        "M1387",
        "M1388",
        "M1389",
        "M1390",
        "M1391",
        "M1392",
        "M1393",
        "M1394",
        "M1395",
        "M1396",
        "M1397",
        "M1398",
        "M1399",
        "M1400",
        "M1401",
        "M1402",
        "M1403",
        "M1404",
        "M1405",
        "M1406",
        "M1407",
        "M1408",
        "M1409",
        "M1410",
        "M1411",
        "M1412",
        "M1413",
        "M1414",
        "M1415",
        "M1416",
        "M1417",
        "M1418",
        "M1419",
        "M1420",
        "M1421",
        "M1422",
        "M1423",
        "M1424",
        "M1425",
        "M1426",
        "M1427",
        "M1428",
        "M1429",
        "M1430",
        "M1431",
        "M1432",
        "M1433",
        "M1434",
        "M1435",
        "M1436",
        "M1437",
        "M1438",
        "M1439",
        "M1440",
        "M1441",
        "M1442",
        "M1443",
        "M1444",
        "M1445",
        "M1446",
        "M1447",
        "M1448",
        "M1449",
        "M1450",
        "M1451",
        "M1452",
        "M1453",
        "M1454",
        "M1455",
        "M1456",
        "M1457",
        "M1458",
        "M1459",
        "M1460",
        "M1461",
        "M1462",
        "M1463",
        "M1464",
        "M1465",
        "M1466",
        "M1467",
        "M1468",
        "M1469",
        "M1470",
        "M1471",
        "M1472",
        "M1473",
        "M1474",
        "M1475",
        "M1476",
        "M1477",
        "M1478",
        "M1479",
        "M1480",
        "M1481",
        "M1482",
        "M1483",
        "M1484",
        "M1485",
        "M1486",
        "M1487",
        "M1488",
        "M1489",
        "M1490",
        "M1491",
        "M1492",
        "M1493",
        "M1494",
        "M1495",
        "M1496",
        "M1497",
        "M1498",
        "M1499",
        "M1500",
        "M1501",
        "M1502",
        "M1503",
        "M1504",
        "M1505",
        "M1506",
        "M1507",
        "M1508",
        "M1509",
        "M1510",
        "M1511",
        "M1512",
        "M1513",
        "M1514",
        "M1515",
        "M1516",
        "M1517",
        "M1518",
        "M1519",
        "M1520",
        "M1521",
        "M1522",
        "M1523",
        "Q3",
        "M1524",
        "M1525",
        "M1526",
        "M1527",
        "M1528",
        "M1529",
        "M1530",
        "M1531",
        "M1532",
        "M1533",
        "M1534",
        "M1535",
        "M1536",
        "M1537",
        "M1538",
        "M1539",
        "M1540",
        "M1541",
        "M1542",
        "M1543",
        "M1544",
        "M1545",
        "M1546",
        "M1547",
        "M1548",
        "M1549",
        "M1550",
        "M1551",
        "M1552",
        "M1553",
        "M1554",
        "M1555",
        "M1556",
        "M1557",
        "M1558",
        "M1559",
        "M1560",
        "M1561",
        "M1562",
        "M1563",
        "M1564",
        "M1565",
        "M1566",
        "M1567",
        "M1568",
        "M1569",
        "M1570",
        "M1571",
        "M1572",
        "M1573",
        "M1574",
        "M1575",
        "M1576",
        "M1577",
        "M1578",
        "M1579",
        "M1580",
        "M1581",
        "M1582",
        "M1583",
        "M1584",
        "M1585",
        "M1586",
        "M1587",
        "M1588",
        "M1589",
        "M1590",
        "M1591",
        "M1592",
        "M1593",
        "M1594",
        "M1595",
        "M1596",
        "M1597",
        "M1598",
        "M1599",
        "M1600",
        "M1601",
        "M1602",
        "M1603",
        "M1604",
        "M1605",
        "M1606",
        "M1607",
        "M1608",
        "M1609",
        "M1610",
        "M1611",
        "M1612",
        "M1613",
        "M1614",
        "M1615",
        "M1616",
        "M1617",
        "M1618",
        "M1619",
        "M1620",
        "M1621",
        "M1622",
        "M1623",
        "M1624",
        "M1625",
        "M1626",
        "M1627",
        "M1628",
        "M1629",
        "M1630",
        "M1631",
        "M1632",
        "M1633",
        "M1634",
        "M1635",
        "M1636",
        "M1637",
        "M1638",
        "M1639",
        "M1640",
        "M1641",
        "M1642",
        "M1643",
        "M1644",
        "M1645",
        "M1646",
        "M1647",
        "M1648",
        "M1649",
        "M1650",
        "M1651",
        "M1652",
        "M1653",
        "M1654",
        "M1655",
        "M1656",
        "M1657",
        "M1658",
        "M1659",
        "M1660",
        "M1661",
        "M1662",
        "M1663",
        "M1664",
        "M1665",
        "M1666",
        "M1667",
        "M1668",
        "M1669",
        "M1670",
        "M1671",
        "M1672",
        "M1673",
        "M1674",
        "M1675",
        "M1676",
        "M1677",
        "M1678",
        "M1679",
        "M1680",
        "M1681",
        "M1682",
        "M1683",
        "M1684",
        "M1685",
        "M1686",
        "M1687",
        "M1688",
        "M1689",
        "M1690",
        "M1691",
        "M1692",
        "M1693",
        "M1694",
        "M1695",
        "M1696",
        "M1697",
        "M1698",
        "M1699",
        "M1700",
        "M1701",
        "M1702",
        "M1703",
        "M1704",
        "M1705",
        "M1706",
        "M1707",
        "M1708",
        "M1709",
        "M1710",
        "M1711",
        "M1712",
        "M1713",
        "M1714",
        "M1715",
        "M1716",
        "M1717",
        "M1718",
        "M1719",
        "M1720",
        "M1721",
        "M1722",
        "M1723",
        "M1724",
        "M1725",
        "M1726",
        "M1727",
        "M1728",
        "M1729",
        "M1730",
        "M1731",
        "M1732",
        "M1733",
        "M1734",
        "M1735",
        "M1736",
        "M1737",
        "M1738",
        "M1739",
        "M1740",
        "M1741",
        "M1742",
        "M1743",
        "M1744",
        "M1745",
        "M1746",
        "M1747",
        "M1748",
        "M1749",
        "M1750",
        "M1751",
        "M1752",
        "M1753",
        "M1754",
        "M1755",
        "M1756",
        "M1757",
        "M1758",
        "M1759",
        "M1760",
        "M1761",
        "M1762",
        "M1763",
        "M1764",
        "M1765",
        "M1766",
        "M1767",
        "M1768",
        "M1769",
        "M1770",
        "M1771",
        "M1772",
        "M1773",
        "M1774",
        "M1775",
        "M1776",
        "M1777",
        "M1778",
        "M1779",
        "M1780",
        "M1781",
        "M1782",
        "M1783",
        "M1784",
        "M1785",
        "M1786",
        "M1787",
        "M1788",
        "M1789",
        "M1790",
        "M1791",
        "M1792",
        "M1793",
        "M1794",
        "M1795",
        "M1796",
        "M1797",
        "M1798",
        "M1799",
        "M1800",
        "M1801",
        "M1802",
        "M1803",
        "M1804",
        "M1805",
        "M1806",
        "M1807",
        "M1808",
        "M1809",
        "M1810",
        "M1811",
        "M1812",
        "M1813",
        "M1814",
        "M1815",
        "M1816",
        "M1817",
        "M1818",
        "M1819",
        "M1820",
        "M1821",
        "M1822",
        "M1823",
        "M1824",
        "M1825",
        "M1826",
        "M1827",
        "M1828",
        "M1829",
        "M1830",
        "M1831",
        "M1832",
        "M1833",
        "M1834",
        "M1835",
        "M1836",
        "M1837",
        "M1838",
        "M1839",
        "M1840",
        "M1841",
        "M1842",
        "M1843",
        "M1844",
        "M1845",
        "M1846",
        "M1847",
        "M1848",
        "M1849",
        "M1850",
        "M1851",
        "M1852",
        "M1853",
        "M1854",
        "M1855",
        "M1856",
        "M1857",
        "M1858",
        "M1859",
        "M1860",
        "M1861",
        "M1862",
        "M1863",
        "M1864",
        "M1865",
        "M1866",
        "M1867",
        "M1868",
        "M1869",
        "M1870",
        "M1871",
        "M1872",
        "M1873",
        "M1874",
        "M1875",
        "M1876",
        "M1877",
        "M1878",
        "M1879",
        "M1880",
        "M1881",
        "M1882",
        "M1883",
        "M1884",
        "M1885",
        "M1886",
        "M1887",
        "M1888",
        "M1889",
        "M1890",
        "M1891",
        "M1892",
        "M1893",
        "M1894",
        "M1895",
        "M1896",
        "M1897",
        "Q4",
        "M1898",
        "M1899",
        "M1900",
        "M1901",
        "M1902",
        "M1903",
        "M1904",
        "M1905",
        "M1906",
        "M1907",
        "M1908",
        "M1909",
        "M1910",
        "M1911",
        "M1912",
        "M1913",
        "M1914",
        "M1915",
        "M1916",
        "M1917",
        "M1918",
        "M1919",
        "M1920",
        "M1921",
        "M1922",
        "M1923",
        "M1924",
        "M1925",
        "M1926",
        "M1927",
        "M1928",
        "M1929",
        "M1930",
        "M1931",
        "M1932",
        "M1933",
        "M1934",
        "M1935",
        "M1936",
        "M1937",
        "M1938",
        "M1939",
        "M1940",
        "M1941",
        "M1942",
        "M1943",
        "M1944",
        "M1945",
        "M1946",
        "M1947",
        "M1948",
        "M1949",
        "M1950",
        "M1951",
        "M1952",
        "M1953",
        "M1954",
        "M1955",
        "M1956",
        "M1957",
        "M1958",
        "M1959",
        "M1960",
        "M1961",
        "M1962",
        "M1963",
        "M1964",
        "M1965",
        "M1966",
        "M1967",
        "M1968",
        "M1969",
        "M1970",
        "M1971",
        "M1972",
        "M1973",
        "M1974",
        "M1975",
        "M1976",
        "M1977",
        "M1978",
        "M1979",
        "M1980",
        "M1981",
        "M1982",
        "M1983",
        "M1984",
        "M1985",
        "M1986",
        "M1987",
        "M1988",
        "M1989",
        "M1990",
        "M1991",
        "M1992",
        "M1993",
        "M1994",
        "M1995",
        "M1996",
        "M1997",
        "M1998",
        "M1999",
        "M2000"
      ],
      "rows": 200,
      "table": true,
      "tojson": true
    },
    {
      "name": "map",
      "title": "Example Map File",
      "object": "map",
      "file": "map.txt.gz",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Name",
        "Chr",
        "Position"
      ],
      "rows": 2004,
      "table": true,
      "tojson": true
    },
    {
      "name": "pedigree",
      "title": "Example Pedigree",
      "object": "pedigree",
      "file": "pedigree.txt.gz",
      "class": [
        "data.frame"
      ],
      "fields": [
        "A_1",
        "A_7"
      ],
      "rows": 199,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "hsphase-package",
      "title": "Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events for Half-sib Families",
      "topics": [
        "hsphase-package",
        "hsphase"
      ]
    },
    {
      "page": "dot-fastdist",
      "title": "Calculate Genotypic Distances",
      "topics": [
        ".fastdist"
      ]
    },
    {
      "page": "dot-fixRotation",
      "title": "Fix strand label rotation across consecutive block-structure columns",
      "topics": [
        ".fixRotation"
      ]
    },
    {
      "page": "dot-hblock",
      "title": "Build haplotype blocks from a BMH result matrix (native routine wrapper)",
      "topics": [
        ".hblock"
      ]
    },
    {
      "page": "dot-maf",
      "title": "Calculate minor allele frequency (MAF)",
      "topics": [
        ".maf"
      ]
    },
    {
      "page": "dot-o2tH",
      "title": "Convert a one-row haplotype to a two-row haplotype",
      "topics": [
        ".o2tH"
      ]
    },
    {
      "page": "dot-ptr2por",
      "title": "Convert a two-row haplotype per individual to a one-row representation",
      "topics": [
        ".ptr2por"
      ]
    },
    {
      "page": "dot-simulateHalfsib",
      "title": "Simulate Half-Sibling Genotypes",
      "topics": [
        ".simulateHalfsib"
      ]
    },
    {
      "page": "addSwitch",
      "title": "Add Switches",
      "topics": [
        "addSwitch"
      ]
    },
    {
      "page": "aio",
      "title": "All-in-one Phasing",
      "topics": [
        "aio"
      ]
    },
    {
      "page": "bmh",
      "title": "Block Partitioning",
      "topics": [
        "bmh"
      ]
    },
    {
      "page": "co",
      "title": "Crossover Detection",
      "topics": [
        "co"
      ]
    },
    {
      "page": "cs",
      "title": "Chromosome Splitter",
      "topics": [
        "cs"
      ]
    },
    {
      "page": "fixSW",
      "title": "Fixing Switch Errors",
      "topics": [
        "fixSW"
      ]
    },
    {
      "page": "genotypes",
      "title": "Example Genotype Data Set",
      "topics": [
        "genotypes"
      ]
    },
    {
      "page": "groupMatSingle",
      "title": "Grouping a Half-sib Family",
      "topics": [
        "groupMatSingle"
      ]
    },
    {
      "page": "hbp",
      "title": "Haplotype Blocks of Phased Data",
      "topics": [
        "hbp"
      ]
    },
    {
      "page": "hh",
      "title": "Heatmap of Half-sibs",
      "topics": [
        "hh"
      ]
    },
    {
      "page": "hss",
      "title": "Half-sib Family Splitter",
      "topics": [
        "hss"
      ]
    },
    {
      "page": "imageplot",
      "title": "Image Plot of Blocking Structure",
      "topics": [
        "imageplot"
      ]
    },
    {
      "page": "impute",
      "title": "Impute of Low Density SNP Marker to High Density (Paternal Strand)",
      "topics": [
        "impute"
      ]
    },
    {
      "page": "map",
      "title": "Example Map File",
      "topics": [
        "map"
      ]
    },
    {
      "page": "ohd",
      "title": "Opposing Homozygote Detection",
      "topics": [
        "ohd"
      ]
    },
    {
      "page": "ohg",
      "title": "Matrix of Opposing Homozygotes",
      "topics": [
        "ohg"
      ]
    },
    {
      "page": "ohplot",
      "title": "Opposing Homozygotes Plot",
      "topics": [
        "ohplot"
      ]
    },
    {
      "page": "para",
      "title": "Parallel Analysis of Data",
      "topics": [
        "para"
      ]
    },
    {
      "page": "pedigree",
      "title": "Example Pedigree",
      "topics": [
        "pedigree"
      ]
    },
    {
      "page": "pedigreeNaming",
      "title": "Fix Pedigree Errors",
      "topics": [
        "pedigreeNaming"
      ]
    },
    {
      "page": "phf",
      "title": "Half-sib Family Phasing",
      "topics": [
        "phf"
      ]
    },
    {
      "page": "pm",
      "title": "Probability Matrix",
      "topics": [
        "pm"
      ]
    },
    {
      "page": "pogc",
      "title": "Parent-Offspring Group Constructor",
      "topics": [
        "pogc"
      ]
    },
    {
      "page": "readGenotype",
      "title": "Read and Check the Genotype File",
      "topics": [
        "readGenotype"
      ]
    },
    {
      "page": "recombinations",
      "title": "Recombination Number",
      "topics": [
        "recombinations"
      ]
    },
    {
      "page": "rplot",
      "title": "Recombination Plot",
      "topics": [
        "rplot"
      ]
    },
    {
      "page": "rpoh",
      "title": "Reconstruct Pedigree Based on Matrix of Opposing Homozygotes",
      "topics": [
        "rpoh"
      ]
    },
    {
      "page": "ssp",
      "title": "Sire Imputation and Phasing",
      "topics": [
        "ssp"
      ]
    },
    {
      "page": "switchDetector",
      "title": "Switch Detector",
      "topics": [
        "switchDetector"
      ]
    }
  ],
  "_rundeps": [
    "gdata",
    "gtools",
    "Rcpp",
    "RcppArmadillo",
    "snow",
    "snowfall"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "hsphase.Rnw",
      "filename": "hsphase.pdf",
      "title": "A brief vignette to illustrate the usage of the main functions of hsphase",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-05-25",
      "modified": "2026-02-17 10:50:02",
      "commits": 6
    }
  ],
  "_score": 3.784617292632875,
  "_indexed": true,
  "_nocasepkg": "hsphase",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "3.0.0",
      "date": "2026-05-18T09:28:40.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "64a2493906812bf2065d2e590419c9a3511ec233",
      "fileid": "70350606e4dac36b85747a374dc20162a7c2082c2187c8bf9a54477cfec16966",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26024589579"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "3.0.0",
      "date": "2026-05-18T09:28:23.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "64a2493906812bf2065d2e590419c9a3511ec233",
      "fileid": "ba48aef586aeb9f80895e741210df63f1eb70704a8ac48ba77416ca36505f670",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26024589579"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "3.0.0",
      "date": "2026-05-18T09:28:19.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "64a2493906812bf2065d2e590419c9a3511ec233",
      "fileid": "e84b8cc96ce5a24043af80611da44548e0f2f517ffa352a0bdd22fa7b3b7e53f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26024589579"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "3.0.0",
      "date": "2026-05-18T09:28:32.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "64a2493906812bf2065d2e590419c9a3511ec233",
      "fileid": "57d79edacc3240a39483cda59c8eda29438f6c4be6060e98f9e70da8573481a8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26024589579"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "3.0.0",
      "date": "2026-06-02T16:03:40.000Z",
      "arch": "emscripten",
      "commit": "64a2493906812bf2065d2e590419c9a3511ec233",
      "fileid": "04dc448ac27a3d0b9e3d664e0c5853ca520ce68e68c2336c6be12bfb7c332da0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26024589579"
    }
  ]
}