Package: gprofiler2 0.2.3

Liis Kolberg

gprofiler2: Interface to the 'g:Profiler' Toolset

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

Authors:Liis Kolberg <[email protected]>, Uku Raudvere <[email protected]>

gprofiler2_0.2.3.tar.gz
gprofiler2_0.2.3.tar.gz(r-4.5-noble)gprofiler2_0.2.3.tar.gz(r-4.4-noble)
gprofiler2_0.2.3.tgz(r-4.4-emscripten)gprofiler2_0.2.3.tgz(r-4.3-emscripten)
gprofiler2.pdf |gprofiler2.html
gprofiler2/json (API)

# Install 'gprofiler2' in R:
install.packages('gprofiler2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

7.86 score 4 stars 14 packages 1.4k scripts 3.0k downloads 21 mentions 17 exports 73 dependencies

Last updated 10 months agofrom:8eca9fa90b. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 21 2024
R-4.5-linuxOKDec 21 2024

Exports:gconvertget_base_urlget_tls_versionget_user_agentget_version_infogorthgostgostplotgsnpensemapViridispublish_gostplotpublish_gosttablerandom_queryset_base_urlset_tls_versionset_user_agentupload_GMT_file

Dependencies:askpassbase64encbitopsbslibcachemclicolorspacecpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcppRCurlrlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml

Gene list functional enrichment analysis and namespace conversion with gprofiler2

Rendered fromgprofiler2.Rmdusingknitr::rmarkdownon Dec 21 2024.

Last update: 2024-02-24
Started: 2019-12-18