{
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  "Package": "gprofiler2",
  "Type": "Package",
  "Title": "Interface to the 'g:Profiler' Toolset",
  "Version": "0.2.4",
  "Maintainer": "Liis Kolberg <liis.kolberg@ut.ee>",
  "Authors@R": "c(person(given = \"Liis\", family = \"Kolberg\", role = c(\"aut\",\"cre\"), email = \"liis.kolberg@ut.ee\"), person(given = \"Uku\",  family = \"Raudvere\", role = \"aut\", email = \"uku.raudvere@ut.ee\"))",
  "Description": "A toolset for functional enrichment analysis and\nvisualization, gene/protein/SNP identifier conversion and\nmapping orthologous genes across species via 'g:Profiler'\n(<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1)\n'g:GOSt' - functional enrichment analysis and visualization of\ngene lists; (2) 'g:Convert' - gene/protein/transcript\nidentifier conversion across various namespaces; (3) 'g:Orth' -\northology search across species; (4) 'g:SNPense' - mapping SNP\nrs identifiers to chromosome positions, genes and variant\neffects. This package is an R interface corresponding to the\n2019 update of 'g:Profiler' and provides access to 'g:Profiler'\nfor versions 'e94_eg41_p11' and higher. See the package\n'gProfileR' for accessing older versions from the 'g:Profiler'\ntoolset.",
  "BugReports": "https://biit.cs.ut.ee/gprofiler/page/contact",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr, rmarkdown",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-23 08:08:20 UTC",
    "User": "root"
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  "Author": "Liis Kolberg [aut, cre], Uku Raudvere [aut]",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-11-11 08:20:02 UTC",
  "RemoteUrl": "https://github.com/cran/gprofiler2",
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    "author": "Liis Kolberg <liis.kolberg@ut.ee>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.2.4\n",
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    "name": "Liis Kolberg",
    "email": "liis.kolberg@ut.ee"
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  "_registered": true,
  "_dependencies": [
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      "version": ">= 3.5",
      "role": "Depends"
    },
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    },
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      "package": "RCurl",
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    },
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    },
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  "_selfowned": false,
  "_usedby": 16,
  "_updates": [
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      "n": 1
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  "_tags": [
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      "date": "2025-11-11"
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  "_stars": 4,
  "_userbio": {
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    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gprofiler2"
  },
  "_mentions": 21,
  "_searchresults": 2272,
  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/gprofiler2.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
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      "version": "0.1.0",
      "date": "2019-03-08"
    },
    {
      "version": "0.1.1",
      "date": "2019-03-25"
    },
    {
      "version": "0.1.2",
      "date": "2019-04-08"
    },
    {
      "version": "0.1.3",
      "date": "2019-04-23"
    },
    {
      "version": "0.1.4",
      "date": "2019-05-24"
    },
    {
      "version": "0.1.5",
      "date": "2019-07-04"
    },
    {
      "version": "0.1.6",
      "date": "2019-08-26"
    },
    {
      "version": "0.1.7",
      "date": "2019-10-31"
    },
    {
      "version": "0.1.8",
      "date": "2019-12-18"
    },
    {
      "version": "0.1.9",
      "date": "2020-04-23"
    },
    {
      "version": "0.2.0",
      "date": "2020-08-27"
    },
    {
      "version": "0.2.1",
      "date": "2021-08-23"
    },
    {
      "version": "0.2.2",
      "date": "2023-06-14"
    },
    {
      "version": "0.2.3",
      "date": "2024-02-23"
    },
    {
      "version": "0.2.4",
      "date": "2025-11-11"
    }
  ],
  "_exports": [
    "gconvert",
    "get_base_url",
    "get_tls_version",
    "get_user_agent",
    "get_version_info",
    "gorth",
    "gost",
    "gostplot",
    "gprofiler_request",
    "gsnpense",
    "mapViridis",
    "publish_gostplot",
    "publish_gosttable",
    "random_query",
    "set_base_url",
    "set_tls_version",
    "set_user_agent",
    "upload_GMT_file"
  ],
  "_help": [
    {
      "page": "gconvert",
      "title": "Gene ID conversion.",
      "topics": [
        "gconvert"
      ]
    },
    {
      "page": "get_base_url",
      "title": "Get the current base URL.",
      "topics": [
        "get_base_url"
      ]
    },
    {
      "page": "get_tls_version",
      "title": "Get the TLS version for SSL",
      "topics": [
        "get_tls_version"
      ]
    },
    {
      "page": "get_user_agent",
      "title": "Get current user agent string.",
      "topics": [
        "get_user_agent"
      ]
    },
    {
      "page": "get_version_info",
      "title": "Get version info of g:Profiler data sources",
      "topics": [
        "get_version_info"
      ]
    },
    {
      "page": "gorth",
      "title": "Orthology search.",
      "topics": [
        "gorth"
      ]
    },
    {
      "page": "gost",
      "title": "Gene list functional enrichment.",
      "topics": [
        "gost"
      ]
    },
    {
      "page": "gostplot",
      "title": "Manhattan plot of functional enrichment results.",
      "topics": [
        "gostplot"
      ]
    },
    {
      "page": "gprofiler_request",
      "title": "Perform a g:Profiler API request",
      "topics": [
        "gprofiler_request"
      ]
    },
    {
      "page": "gsnpense",
      "title": "Convert SNP rs identifiers to genes.",
      "topics": [
        "gsnpense"
      ]
    },
    {
      "page": "mapViridis",
      "title": "Map vector of numeric values to Viridis color scale.",
      "topics": [
        "mapViridis"
      ]
    },
    {
      "page": "publish_gostplot",
      "title": "Create and save an annotated Manhattan plot of enrichment results.",
      "topics": [
        "publish_gostplot"
      ]
    },
    {
      "page": "publish_gosttable",
      "title": "Create and save a table with the functional enrichment analysis results.",
      "topics": [
        "publish_gosttable"
      ]
    },
    {
      "page": "random_query",
      "title": "Generate a random gene list for testing.",
      "topics": [
        "random_query"
      ]
    },
    {
      "page": "set_base_url",
      "title": "Set the base URL.",
      "topics": [
        "set_base_url"
      ]
    },
    {
      "page": "set_tls_version",
      "title": "Set the TLS version to use for SSL",
      "topics": [
        "set_tls_version"
      ]
    },
    {
      "page": "set_user_agent",
      "title": "Set custom user agent string.",
      "topics": [
        "set_user_agent"
      ]
    },
    {
      "page": "upload_GMT_file",
      "title": "Upload custom annotations for functional enrichment analysis in g:GOSt.",
      "topics": [
        "upload_GMT_file"
      ]
    }
  ],
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  ],
  "_vignettes": [
    {
      "source": "gprofiler2.Rmd",
      "filename": "gprofiler2.html",
      "title": "Gene list functional enrichment analysis and namespace conversion with gprofiler2",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Installation and loading",
        "Gene list functional enrichment analysis with gost",
        "Enrichment analysis",
        "Multiple queries",
        "Visualization",
        "Data sources and versions",
        "Custom data sources with upload_GMT_file",
        "Creating a Generic Enrichment Map (GEM) file for EnrichmentMap",
        "Gene identifier conversion with gconvert",
        "Mapping homologous genes across related organisms with gorth",
        "SNP identifier conversion to gene name with gsnpense",
        "Accessing archived versions or the beta release with set_base_url",
        "Supported organisms and identifier namespaces",
        "Citation",
        "Need help?",
        "References"
      ],
      "created": "2019-12-18 12:40:02",
      "modified": "2025-11-11 08:20:02",
      "commits": 7
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