Package: geostatsp 2.0.6

Patrick Brown

geostatsp: Geostatistical Modelling with Likelihood and Bayes

Geostatistical modelling facilities using 'SpatRaster' and 'SpatVector' objects are provided. Non-Gaussian models are fit using 'INLA', and Gaussian geostatistical models use Maximum Likelihood Estimation. For details see Brown (2015) <doi:10.18637/jss.v063.i12>. The 'RandomFields' package is available at <https://www.wim.uni-mannheim.de/schlather/publications/software>.

Authors:Patrick Brown [aut, cre, cph]

geostatsp_2.0.6.tar.gz
geostatsp_2.0.6.tar.gz(r-4.5-noble)geostatsp_2.0.6.tar.gz(r-4.4-noble)
geostatsp_2.0.6.tgz(r-4.4-emscripten)
geostatsp.pdf |geostatsp.html
geostatsp/json (API)

# Install 'geostatsp' in R:
install.packages('geostatsp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • openblas– Optimized BLAS
Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.16 score 5 stars 73 scripts 701 downloads 27 exports 6 dependencies

Last updated 10 months agofrom:4c8b9aef10. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 17 2024
R-4.5-linux-x86_64OKNov 17 2024

Exports:conditionalGmrfexcProbfillParamglgminformationLgminla.modelskrigeLgmlgcplgmlikfitLgmloglikLgmmaternmaternGmrfPrecmodelRandomFieldsNNmatpcPriorRangepostExpprofLlgmRFsimulatesimLgcpsimPoissonPPspatialRocspdfToBricksquareRasterstackRasterListvariogvariogMcEnv

Dependencies:abindlatticeMatrixnumDerivRcppterra

LGCP with PC priors

Rendered fromlgcp.Rnwusingknitr::knitron Nov 17 2024.

Last update: 2023-09-23
Started: 2016-03-05

Various GLGM examples

Rendered fromglgm.Rnwusingknitr::knitron Nov 17 2024.

Last update: 2024-02-21
Started: 2018-01-03

Readme and manuals

Help Manual

Help pageTopics
Conditional distribution of GMRFconditionalGmrf
Exceedance probabilitiesexcProb
Gambia datagambiaUTM
Generalized Linear Geostatistical Modelsglgm glgm,ANY,ANY,ANY,ANY-method glgm,formula,data.frame,SpatRaster,data.frame-method glgm,formula,SpatRaster,ANY,ANY-method glgm,formula,SpatVector,ANY,ANY-method glgm-methods lgcp
Valid models in INLAinla.models
Spatial prediction, or KrigingkrigeLgm
Linear Geostatistical Modelslgm lgm,character,ANY,ANY,ANY-method lgm,formula,data.frame,SpatRaster,data.frame-method lgm,formula,SpatRaster,ANY,ANY-method lgm,formula,SpatVector,numeric,ANY-method lgm,formula,SpatVector,SpatRaster,data.frame-method lgm,formula,SpatVector,SpatRaster,list-method lgm,formula,SpatVector,SpatRaster,missing-method lgm,formula,SpatVector,SpatRaster,SpatRaster-method lgm,missing,ANY,ANY,ANY-method lgm,numeric,ANY,ANY,ANY-method lgm-methods
Likelihood Based Parameter Estimation for Gaussian Random FieldslikfitLgm loglikLgm
Loaloa prevalence data from 197 village surveyselevationLoa eviLoa loaloa ltLoa tempLoa
Evaluate the Matern correlation functionfillParam matern matern.default matern.dist matern.SpatRaster matern.SpatVector
Precision matrix for a Matern spatial correlationmaternGmrfPrec maternGmrfPrec.default maternGmrfPrec.dgCMatrix NNmat NNmat.default NNmat.SpatRaster
Murder locationsmurder torontoBorder torontoIncome torontoNight torontoPdens
PC prior for range parameterpcPrior pcPriorRange
Exponentiate posterior quantilespostExp
Joint confidence regionsinformationLgm profLlgm
Simulation of Random FieldsmodelRandomFields RFsimulate RFsimulate,ANY,SpatRaster-method RFsimulate,data.frame,ANY-method RFsimulate,matrix,SpatRaster-method RFsimulate,matrix,SpatVector-method RFsimulate,numeric,SpatRaster-method RFsimulate,numeric,SpatVector-method RFsimulate,RMmodel,SpatRaster-method RFsimulate,RMmodel,SpatVector-method RFsimulate-methods
Rongelap datarongelapUTM
Simulate a log-Gaussian Cox processsimLgcp simPoissonPP
Sensitivity and specificityspatialRoc
Create a raster with square cellssquareRaster squareRaster,matrix-method squareRaster,SpatExtent-method squareRaster,SpatRaster-method squareRaster,SpatVector-method squareRaster-methods
Converts a list of rasters, possibly with different projections and resolutions, to a single raster stack.spdfToBrick stackRasterList
Swiss rainfall dataswissAltitude swissBorder swissLandType swissRain
Raster of Swiss rain dataswissNN swissRainR
Compute Empirical Variograms and Permutation Envelopesvariog variog.default variog.SpatVector variogMcEnv variogMcEnv.default variogMcEnv.SpatVector
Mercer and Hall wheat yield datawheat